Pyrus communis (pear): 137717649
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Entry
137717649 CDS
T10779
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pcox Pyrus communis (pear)
Pathway
pcox03013
Nucleocytoplasmic transport
pcox03015
mRNA surveillance pathway
pcox03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137717649
09122 Translation
03013 Nucleocytoplasmic transport
137717649
03015 mRNA surveillance pathway
137717649
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcox03019
]
137717649
03041 Spliceosome [BR:
pcox03041
]
137717649
Enzymes [BR:
pcox01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
137717649
Messenger RNA biogenesis [BR:
pcox03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
137717649
Spliceosome [BR:
pcox03041
]
Complex C
Other components
EJC/TREX
137717649
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
137717649
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
137717649
NCBI-ProteinID:
XP_068313172
LinkDB
All DBs
Position
15:complement(11073626..11078891)
Genome browser
AA seq
426 aa
AA seq
DB search
MGETRDDVYDEELVDYEEEEEKAPDSAAKVNGEAPKKGYVGIHSSGFRDFLLKPELLRAI
VDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLC
HTRELAYQICHEFERFSTYLPDLKVAVFYGGVSIKLHKDLLKNECPHIVVGTPGRILALA
RDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKDIRPVCK
KFMQDPMEIYVDDEAKLTLHGLVQHYIKLTEAEKNRKLNDLLDALDFNQVVIFVKSVSRA
AELNKLLSECNFPSICIHSGMNQEERLKRYKGFKEGQNRILVATDLVGRGIDIERVNIVI
NYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNDVQERFEVDIKELPEQIDT
ATYMPS
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaaactagggacgacgtctacgacgaggagctcgtcgattacgaagaagaggag
gagaaggcccccgactccgcagctaaagtcaacggagaagcccccaaaaagggttatgtt
ggaattcacagttcagggttcagagatttccttttgaagcctgagcttcttcgggctatt
gtcgactctggatttgagcatccttctgaagtgcaacatgaatgtattcctcaagctatc
ctggggatggatgttatatgtcaggctaaatctgggatgggaaaaactgctgtttttgtt
ctatcaactttacagcagattgaccctgttgcaggccaagtatctgcacttgtgctttgc
catactagagaattagcataccagatttgtcatgaatttgagaggttcagtacgtacctg
cctgatctcaaggttgctgtcttctatggtggtgtcagtatcaaacttcacaaagattta
ctgaaaaatgaatgcccgcacattgttgtcggaactcccggacgaatactagcactggca
agagataaagacctgtcgttgaaaaacgtgaggcattttattcttgatgaatgtgacaag
atgcttgaatcacttgacatgcggagagatgtgcaggagatcttcaagatgacgcctcac
gataagcaagtgatgatgttttccgcaacacttagcaaagacatccgcccggtttgcaag
aaatttatgcaagatcctatggaaatatatgttgatgatgaagccaagttgaccttgcat
ggactagtgcagcactacatcaagttaactgaggcagagaagaaccgcaagttgaatgac
ctccttgatgcattggacttcaatcaagttgttatcttcgtcaaaagcgttagcagagct
gccgagctgaacaagttactttcagagtgtaactttccctccatatgcatccattctgga
atgaaccaagaagaaaggttgaagcggtacaaaggattcaaggagggtcagaacaggatt
cttgtggcaactgatttagttggtagaggaattgacatcgaacgcgttaacattgttatc
aactacgacatgccagattctgctgacacttatttacacagggttggcagagctggtagg
tttggcaccaaaggtcttgcaattacgtttgtttcatccgcagcagactccgatgttcta
aatgatgttcaggaaaggtttgaggttgatataaaggagcttcctgaacagattgacaca
gccacatacatgccatcttaa
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