Pyrus communis (pear): 137717730
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Entry
137717730 CDS
T10779
Name
(RefSeq) cleavage stimulation factor subunit 77 isoform X1
KO
K14408
cleavage stimulation factor subunit 3
Organism
pcox Pyrus communis (pear)
Pathway
pcox03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
137717730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcox03019
]
137717730
Messenger RNA biogenesis [BR:
pcox03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
137717730
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
PRP6_TPR
TPR_15
TPR_19
TPR_YpiA_C
TPR_2
CFAP70_mid_TPR
TPR_9
TPR_CcmH_CycH
TPR_YpiA
TPR_16
ANAPC16
Motif
Other DBs
NCBI-GeneID:
137717730
NCBI-ProteinID:
XP_068313292
LinkDB
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Position
15:complement(24131276..24150337)
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AA seq
763 aa
AA seq
DB search
MEPESRKVGDHAHKFIDDKYSVEASENQANEALRLPITEAAPIYEQLLTVFPTAAKYWKQ
YVEAQMAVNNDDATKQIFSRCLLNCLQIPLWRCYIRFIRKVNDKKGVEGQEETRKAFDFM
LSYVGADIASGPVWMEYLTFLKSLPALNTQEESQRMTAVRKVYQKAIVTPTHHIEQLWKD
YENFENSVSRQLAKGLLSEYQPKFNSARAVYRERKKYVDEIDWNMLAVPPNGSYKQELQW
MAWKKLLAFEKGNPQRIDNGSSNKRIIFTYEQCLMYLYHYPDLWYDYAMWHAKSGSVDTA
IKVFQRALKVLPDSEMLRYAYAELEESRGAIQPTKKIYEGLLGDGINTSALAHIQFIRFL
RRTEGVEAARKYFLDARKSPNCTYHVYVAYAMMAFCLDKDPKMAHNVFEAGLKRFMHEPV
YILEYADFLTRLNDDRNIRALFERALSSLPSEESVEVWKRFTIFEQTYGDLASMLKVEQR
KKAALAGAGEEGPSSLEGSLQDVASRYSFMDLWPCSSKDLDHLARQEWLAKNIHKKVEKS
SMLNAPGFAEEGSASLISNLAVSSQVVYPDTNQMVIYDPRQKPGAENFQTTTAAGVPTAS
KSTSNPMIAAVCGQTISAFDEILKATPPALVAFLANLPVVEGPTPDVDVVLSICLQNDVP
TPQPGKSGTAPMPLASIPVPSTSDLSVSSKSHPILSGSSFKPSRGKRKHLDSQEDDEMTV
QSHPLPRDAFRIRQIQKARGTTSQTGSASYGSAISGDVSGSTG
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atggaacccgagtctcgaaaagttggagatcacgctcacaaattcatcgatgataagtac
agtgttgaagccagcgaaaatcaagccaatgaggcactacgtttgcctattacagaggca
gcaccaatatacgagcagcttttaacggtgtttcccactgcggcaaaatattggaagcaa
tatgtggaggcgcaaatggctgtaaataatgatgatgccacaaaacagatatttagccgg
tgtctgttgaattgtctgcaaattcctctttggcgatgctacattcgtttcatcagaaag
gtcaatgacaagaagggggtagagggtcaggaagagactagaaaagcttttgattttatg
ctcagttatgttggggcagatatagcatctgggcctgtgtggatggagtacctcaccttt
ttaaagtctttgccggctttaaacacacaggaagagtcacagcgcatgactgctgtgcga
aaagtataccagaaagccattgttactcctacccatcacatcgaacaactctggaaggat
tatgaaaattttgaaaattctgtcagccgtcaactggcaaaaggactgttatctgaatat
caacccaaatttaacagcgccagggccgtttatagggagcggaagaagtatgttgatgaa
attgactggaatatgcttgctgtaccaccaaatggctcttataagcaagaactacaatgg
atggcatggaaaaagttattagctttcgaaaaaggaaacccacaaaggatagacaatgga
tcatccaacaagcgaatcattttcacttatgagcagtgtctaatgtatctataccattat
cctgatttatggtatgactatgccatgtggcatgcaaaaagtggttctgtagatactgca
attaaggtatttcaaagagcattgaaggttcttcctgactcggagatgcttagatatgct
tatgcagagctggaagaatcccgtggagcaattcagcccacaaagaaaatatatgaaggc
cttttgggagatggtattaacacatcagcacttgctcatatacagtttattcgcttttta
aggagaactgaaggagttgaagcagctcgcaagtactttttagatgcgcgcaaatctcca
aactgcacgtaccatgtttatgttgcttatgcgatgatggctttctgtcttgacaaggat
ccaaagatggcacacaatgtttttgaagctgggttgaaacggtttatgcatgagcctgtt
tacattcttgaatatgcagactttttaactcgtttgaatgatgatagaaatattcgggcc
ttatttgagagggcattaagctcattaccatcagaggaatctgttgaggtatggaagcga
ttcaccatttttgagcaaacttatggagatttggctagtatgttgaaggttgaacaaagg
aaaaaagcagcacttgccggagcaggtgaagagggaccttcatcattggaaggttcattg
caagatgttgcatcacgatatagtttcatggatctctggccctgctcttcaaaggacttg
gatcatttagcccgacaagagtggcttgctaaaaatatccataaaaaagtggagaagtca
agtatgttgaatgcacctgggtttgcagaagagggttctgcaagcctgataagcaattta
gcggtgtcatcacaagtagtttatcccgatactaaccaaatggttatctatgatccaagg
caaaaacctggggcagaaaattttcaaaccacaacagcagctggagttcccactgcgtct
aaatccacatcaaatcccatgattgcagcagtgtgtggtcaaacaatcagtgcatttgat
gaaatattaaaagctacaccacctgctttggtagcgttcttagcaaatttgccagtcgtt
gagggtccaacaccagatgttgatgtcgtgttatcgatttgtttgcaaaatgatgtacca
acaccacaacctgggaagtcagggactgctccaatgccattggcatctatacccgtccct
tctacgagtgatctttctgtttcaagcaagtctcatcccatcctaagtgggtcatctttc
aagccaagcagggggaaaaggaaacatttagatagccaggaggacgacgaaatgacagtc
cagagtcacccgctcccaagagatgctttcaggatacggcagatccagaaggctcgcggt
accacttcacagactggatcagcttcatatggaagtgcaatttctggagatgtatctggc
agcactggctaa
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