Pyrus communis (pear): 137720221
Help
Entry
137720221 CDS
T10779
Name
(RefSeq) regulator of nonsense transcripts UPF2-like
KO
K14327
regulator of nonsense transcripts 2
Organism
pcox Pyrus communis (pear)
Pathway
pcox03013
Nucleocytoplasmic transport
pcox03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
137720221
03015 mRNA surveillance pathway
137720221
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcox03019
]
137720221
Messenger RNA biogenesis [BR:
pcox03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
137720221
mRNA cycle factors
P-body specific factors
137720221
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Glycos_transf_N
Motif
Other DBs
NCBI-GeneID:
137720221
NCBI-ProteinID:
XP_068315362
LinkDB
All DBs
Position
16:7408309..7419824
Genome browser
AA seq
1186 aa
AA seq
DB search
MENHEEEGGAGSEPHGKQDDEEAAARLEEVKKSIEAKMALRQSNLNPERPDTGFLRTLDS
SIKRNTAVIKKLKQINEEQREGLMDDLRGVNLSKFVSEAVTAICDAKLRSSDIQAAVQIC
SLLHQRYKDFSPTLLQGLLKVFFPGKSGDDLEADKNLRAMKKRSTLKLLVELFFVGVIED
GGVFVNIIKDLTSGEHLKDWDTTQTNLTLLASFARQGRMFLGLPLSGPEIHEEFFKGLNI
TTDQKKFFRKAFQTYYVAAAELLQSEHTSLRQMEHENAKILNAKGELSDESVSSYEKLRK
SYEHLYRNISSLAEALDMQPPVMPDDGHTTRVTSGEDASSAAAGKDSSALEAIWDDEDTR
AFYECLPDLRAFVPAVLLGEAESKSSDQSAKTQEQSTEPTLESDQSQQTTEDTGESSADV
GALQEGKTTEKGKDKEEKEKDKIKDPDKEKGDRKGEHEKEKLKSIEGTNLDALLQRLPGC
VSRDLIDQLTVEFCYLNSKANRKKLVRAVFNVPRTSLELLAYYSRLVATLSTCMKDVSSM
LLAMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKIAPAGLVFSCLKACLDDFSHHN
IDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPE
RSARVTKVRPPLHQYIRKLLFSDLDKSTIEHVLRQLRKLPWGECEPYLLKCFLKVHKGKY
GQIHLIASLTAGLSRYHDEFAVSVVDEVLEEVRVGLELNEYGMQQRRIAHMRFLGELYNY
EHVDSSVIFETLYLTLAFGHGTPEQDVLDPPEDCFRMRMVITLLETCGHYFDRGSSKRKL
DRFLMHFQRYILSKGVLPLDVEFDLQDLFADLRPNMTRYSSIEEVNAALVELEERDRTVS
IDKNNNEKHSDTEKPSRRNTSNKMSVNGTEENGVDHGDLGDSDSDSGSGTINRDRHDEEG
LGEENHDGGSDSNEDDDDDGGGGPVSDEDDEVHVRQKVAEVDPQEAEKFELDLKAVMQES
MEQRRLELRSRPTLNMTIPMNVFEGSTKDHHGRVVGGESGDEALDEESGGSKEVQVKVLV
KRGNKQQTKQMYIPRDCSLIQSTKQKEAAEFEEKQDIKRLVLEYNDREEEELNGLGNQTL
NYMQSGSNRLASRGSTWEGTSGRGGGARHRYHSSYSGSGVHYSRKK
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atggagaaccatgaggaggaaggcggtgctggcagtgaacctcatgggaagcaagatgat
gaggaagccgctgctcggcttgaggaagtcaagaaatctattgaggcaaagatggctctt
cgtcaaagcaatctgaaccctgagcggcctgacacaggatttctgaggacactggattct
agcattaagcgcaacacagcagttattaaaaaactgaagcagataaatgaagagcagcgg
gaaggtttgatggatgacttgagaggtgtcaacctaagcaaatttgtcagtgaagctgtt
actgctatttgtgatgccaagcttagatcgtcagacatacaagcagcagtccagatctgc
tctctgcttcatcaaaggtacaaagacttctccccaactctgcttcaaggtcttttgaaa
gtattttttccgggaaagtctggggatgacttagaagcagacaagaacttgagggccatg
aagaagcgaagcactttgaaactccttgtggaacttttctttgttggagttatagaagac
ggtggtgttttcgtgaatatcattaaggatcttaccagcggagaacacttaaaggattgg
gatactactcagacaaatttgactcttcttgctagttttgctcgtcagggaagaatgttt
cttggccttccactctctgggccggaaattcatgaagagttttttaagggccttaatatc
acgacagatcaaaagaaatttttcaggaaggcatttcaaacatattatgttgctgctgca
gaactgttgcaatccgagcatacttcacttcgccaaatggagcatgaaaatgctaaaatc
cttaatgctaaaggagagctcagtgatgaaagtgtctcatcatatgagaagctgcggaaa
tcatatgaacatttgtaccgcaatatctcatctttagcagaagcacttgatatgcagccc
ccagtaatgccagatgatggtcacacaacaagggttactagtggggaggatgcttcatct
gctgctgctggaaaggattcttcagcacttgaagccatatgggatgatgaagatacaagg
gctttctatgaatgcttaccagatcttagagcatttgttccggcagtattattgggagaa
gcagagtctaaaagcagtgatcaatctgcaaagacccaggaacaatcaactgaacccacg
cttgaatcagaccaaagtcaacaaactacagaagatactggagagtcttctgcagatgtt
ggtgctttacaagagggcaaaaccacagagaaaggaaaggacaaggaagaaaaagaaaaa
gacaagatcaaagatccagacaaagagaaaggtgatagaaaaggagagcatgagaaagag
aagctcaaaagtattgaagggacaaatttggatgctttactgcagaggcttcctggttgc
gtgagccgtgatcttattgatcagttgactgtagagttttgttatttaaattcaaaagca
aatcggaaaaagcttgtgagggcagtatttaatgtccctagaacctcattggagctacta
gcttactattcacgtttggttgccacactctcaacttgtatgaaggacgtctcatccatg
ctcctagcgatgttggaagaagagttcaacttcttaattaataaaaaggatcaaatgaac
attgaaacaaagattaggaacattagatttattggagaactctgcaagtttaagattgca
ccagctggtcttgtctttagttgtttgaaggcttgtttggatgatttcagtcatcataac
attgatgttgcttgcaatcttcttgagacttgtgggcgctttctgtatcgatctcctgaa
actactgtgcggatggcgaacatgttggaaatattaatgcgcttgaagaatgtaaaaaat
ttagaccctcggcacagcacccttgttgaaaatgcctactacctatgcaaaccacctgag
agatccgcacgggtcactaaagtccgtcctccattgcatcagtatataagaaagttgctc
ttctcagatcttgacaagtctaccatagagcatgtgctcaggcaactgcgtaaactacca
tggggtgaatgtgagccgtatcttttaaaatgctttctgaaggttcacaaggggaagtat
ggtcagatccacttgattgcttctctcaccgctggtttgagccgctatcatgatgaattt
gctgtatctgttgttgacgaggttctagaggaggtacgggttggcctagaattaaatgag
tatgggatgcagcaaagacggattgcccatatgcgattcttaggagagctatacaactat
gagcatgtagattcttctgttatttttgagactctgtatttgactcttgcctttggccac
ggcacaccagagcaagatgtactggatccaccagaagattgtttccgcatgaggatggtc
attactcttcttgaaacctgtggtcactactttgatcgaggctcttccaagaggaaactt
gatcgattcttgatgcactttcagagatatatactaagtaaaggtgtactaccgcttgat
gttgaatttgacttacaggacttgtttgccgatctacgccccaacatgactcgatactct
tccattgaagaagttaatgcagctcttgtagaacttgaggaacgtgatcgtactgtctcc
attgacaagaacaataatgagaagcactccgacactgaaaaaccttcaaggaggaacacc
tccaacaaaatgtcagtgaatggaaccgaggaaaatggtgttgatcatggagaccttgga
gatagtgacagtgattcaggaagtggcaccattaatcgagatagacatgatgaagaagga
ttgggtgaagagaatcatgatggtggatctgacagtaatgaggatgatgatgatgatggt
ggtggtggaccggtatccgatgaggacgatgaagtccatgtcagacagaaggttgcagaa
gtggaccctcaagaagcagaaaagtttgagctggatctcaaagctgttatgcaggaaagc
atggagcaacgtaggctagagctgagaagccgaccaacattaaacatgacgataccgatg
aatgtgtttgaggggtccaccaaggaccatcatggaagagtggttggaggggaaagtgga
gatgaggcgttggatgaagagtctggaggaagcaaggaggtccaggtgaaagttcttgtc
aagcgtggtaacaagcaacaaacaaagcagatgtacatccctcgggattgctcacttatc
cagagcacgaaacaaaaagaagcagcagagtttgaagagaaacaagacatcaagaggttg
gttttggaatacaatgacagagaagaagaggagcttaatggattggggaaccaaactctg
aactatatgcagagtggcagcaatagacttgccagtcgtggcagcacttgggaaggaact
agcggtagaggtggtggagcacgtcatagatatcacagtagttattccggtagcggagtt
cactacagcaggaaaaagtaa
DBGET
integrated database retrieval system
