Pyrus communis (pear): 137720229
Help
Entry
137720229 CDS
T10779
Name
(RefSeq) zinc finger CCCH domain-containing protein 40-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
pcox Pyrus communis (pear)
Pathway
pcox03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137720229
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcox03041
]
137720229
Spliceosome [BR:
pcox03041
]
Complex B
Other components
Prp19-related factors
137720229
Complex C
137720229
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
zf-CCCH
zf-CCCH_3
RRM_3
zf-CCCH_10
RRM_YTH1
zf-CCCH_4
RRM_occluded
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
137720229
NCBI-ProteinID:
XP_068315372
LinkDB
All DBs
Position
16:7740258..7743754
Genome browser
AA seq
503 aa
AA seq
DB search
MAHRLLRNVEADGWERSDFPIICESCLGDNPYVRMTRADYDKECKICTRPFTVFRWRPGR
DARFKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALAISSDDAIPKSDVNREFFAE
EHDRKARAGIDYESSYGKARPSDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYR
HEMPITGELSQQNIKDRYYGVNDPVAMKLLNKAGEMPSLEPPEDGSIRTLYVGGLDARIS
EQDLRDQFYAHGEIESVRMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGR
PQAPKQESEGTAEARQQAVAHGGLLPRAVISQQQNQSQDPAAPVHYYNVPPPPSQERSFY
PSMDPQRMGALIPSKEGAPSGITGSGERSSASERQQHSQHYAFQNMAHPHGQYRQQFYPP
YGHMPPPSPQYQQYPPQYHATVPPPTSLPMNHQYQHSATPGPAPPGSTSLGSAPSSGSAP
SSSGPSESTPSASGSAPTGSSQQ
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atggcacacaggttgcttaggaatgtggaggcagatggttgggaacgatcagattttccc
atcatctgcgagtcatgcttgggagacaatccctatgtccggatgacacgagctgattat
gacaaggagtgcaagatttgcacacgtccgttcacagttttcaggtggaggcctggtcgt
gatgcacgatttaagaagtcagagatttgccagacgtgcagtaagttgaaaaacgtttgt
caagtttgtctcttggatcttgaatatggcttgccagttcaggttcgagatactgctctg
gccatcagttctgacgatgctattccaaagagtgatgtaaatagggagttttttgctgag
gaacatgaccgaaaggctagagctggtatagattatgaatcttcatacggaaaggcacgg
cccagtgacactattctgaaacttcaaagaacaacaccctattacaaaaggaacagagca
catgtctgcagtttttacatccggggtgagtgtacaagaggtgctgagtgcccttacagg
cacgaaatgcccataactggggaattgtcacaacaaaatatcaaagatcgttactatgga
gtcaatgatccagtggcgatgaagcttcttaacaaggccggagagatgccctccttggaa
cctcctgaggatggaagcataagaaccttatacgtgggtgggcttgatgcgagaatttcg
gagcaggatttgagggatcagttttatgctcatggtgaaatagaatccgttaggatggta
ctgcaacgagcatgtgcgtttgtaacctacacaacaagagaaggtgcagaaaaggctgca
gaagaactctctaacaaactggtaataaagggtttgaggttgaagttaatgtggggtagg
cctcaagcacctaaacaggaatcagagggcacggctgaagctagacagcaggcggtggct
catggtggtttgttgcctcgagcagtcatatctcaacaacagaaccaatcacaagaccca
gctgcacctgtgcactactacaacgtgccacctccaccttcacaggagaggtcattctat
ccatccatggatcctcaaagaatgggtgcccttattccatcgaaggaaggggctcctagt
gggatcacagggtcaggagagcgcagttccgcttcagagaggcagcaacatagtcagcat
tatgcttttcagaacatggctcatccacatggccaatatcgtcagcagttttatcctcca
tatgggcatatgcctccaccatcaccacagtaccagcaataccctccgcaatatcatgct
acagtgccgccaccaacatccttgccaatgaaccatcagtaccagcattctgcgacacca
gggccggcacccccaggttctacatctttgggatctgcgccgtcatcaggatctgcacct
tcaagttctggaccttcggaatctactccatctgcatccggatctgcaccaacggggtca
tcacagcagtga
DBGET
integrated database retrieval system
