Pyrus communis (pear): 137721055
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Entry
137721055 CDS
T10779
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
pcox Pyrus communis (pear)
Pathway
pcox03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
137721055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcox03021
]
137721055
03019 Messenger RNA biogenesis [BR:
pcox03019
]
137721055
Transcription machinery [BR:
pcox03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
137721055
RNA polymerase I system
137721055
Messenger RNA biogenesis [BR:
pcox03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
137721055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
Spt5-NGN
KOW2_Spt5
KOW5_SPT5
KOW
Spt5_N
DUF4438
KOW7_SPT5
Motif
Other DBs
NCBI-GeneID:
137721055
NCBI-ProteinID:
XP_068316278
LinkDB
All DBs
Position
16:10608881..10611309
Genome browser
AA seq
669 aa
AA seq
DB search
MKRRGRENSLYEQEEYPEEALFYDEDGEEKEEERQGGGSDSKRRRSDRREDFASKFLDIE
AEVDSEEEDYESEPEDEGFIAQPGDDPNPSDGEDDDDVRRAKQGRPLFPEELESEEDIEE
LERRVQGHFDSHQIQFDDGDDDDEIGQQARLPCVSDPKLWMVKCAIGHEREVALCLAQKC
INQKSNPSYMIRSAIASDNLKNYIYVEAEKEAHVREACKGMRYVFAAQKIVLVPIKEMVG
VVSMDRKPSVDVSVDSWVRMKRVKTYEGDLGRVVDVDDVRRRVTVKLIPRIDFPELASKL
EGLGLQKKRFVPPPARLMNVDEAERVLGIQVKETRDRATGEYFDKIGDMKFKDGFLYKTV
AMSSISWHNVNPTLDELEKFRNPPGNENADRGDDMFSNRNKGEFMKGDAVVVVKGDLINL
AGRVEKVEEGNVHMRPDMKGLPETLVINKNNLCKYFKIGNHVKVTSGSQKGAAGMVVKVD
QQHGLVTIITDKTKKHVCVFADDVVESSGATGDDANGVSSFSRFGHYRTPSKFSGGGRRG
PDANGLDAGTRVKIRQGVYKGYRGRVVEVKGQNLLVELESQMKIVTVDRRSCVSHSDNFA
AVGTLYRYGNGMRGAETPMRDFRATPLHSFMTTPMRDPNATPLHSYMTSPMRDPRATPIH
DGMKTPMLF
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgccgcggaagagaaaactcgttatacgaacaggaagaatatccagaagaggcc
cttttttacgacgaagacggagaagagaaggaggaggagcgacaaggaggaggctctgat
agtaaaaggaggagatcggatcgcagagaagatttcgcatcgaagtttttggatattgaa
gccgaggtcgatagcgaagaggaagactatgaatctgagcccgaggacgagggcttcata
gcccaacctggcgacgatccaaacccgagtgatggagaagacgatgacgacgttagaagg
gcgaaacaaggtcggccgttgttcccggaggaattggagtcggaggaagatattgaagaa
ttagagagaagagttcaggggcattttgattctcaccaaattcagtttgatgatggtgat
gatgatgatgaaattgggcagcaagctcggttgccttgcgtaagtgacccgaaattgtgg
atggtcaaatgcgcgatcgggcacgagagagaggttgctctctgcttggcgcagaagtgc
atcaatcaaaaatcaaatccatcttatatgatcaggtctgcaattgcttctgataatctg
aaaaactacatatatgttgaggcagaaaaagaagcccatgtgagagaagcttgcaaaggc
atgcgctatgtgtttgctgcccagaaaattgttcttgttcctattaaggagatggtaggt
gtcgtttctatggacagaaaaccctccgttgatgtttcagtggatagttgggtgaggatg
aagagggtaaagacgtatgaaggggaccttggcagggttgtggatgtggatgatgtgagg
aggagggttactgtgaaattgattccaaggattgattttccagaacttgcgagtaaattg
gagggactaggcctacaaaagaagagatttgttcctcctcctgcgcggttgatgaacgtt
gatgaagctgaaagagtactggggattcaggtaaaggagacaagagatcgggcgacgggt
gaatactttgataagattggtgacatgaagtttaaagatgggttcttgtataagaccgtg
gcaatgagttcgatcagctggcataatgtaaatcctactttggatgaacttgaaaaattt
agaaaccctccagggaatgagaatgccgatcgtggcgatgatatgttttcgaaccgaaat
aaaggagagtttatgaagggtgatgcagttgtggtggtgaagggagatctgataaatttg
gcggggagggttgagaaggttgaggaagggaatgttcatatgcgacccgacatgaaaggc
cttccagaaactcttgtgataaacaagaacaatctttgcaagtactttaaaattgggaat
catgtgaaggttacatccggtagtcagaaaggtgctgctggcatggttgtgaaggttgat
cagcagcatgggctggtcaccattataactgataaaaccaagaaacatgtttgcgtgttc
gctgacgatgttgtggagagttctggtgctactggtgatgatgctaatggtgtttctagt
ttctcaagatttggccattacagaactccgagcaagttttctggaggtggaagaagaggg
cctgatgctaatggtttggatgcagggactagggtgaaaattcggcagggtgtttataag
ggctaccgcggtcgtgttgtagaggtcaaaggacaaaatctgctggttgaattagagtcc
caaatgaagattgtaacagttgatcgtcgaagttgtgtttctcattctgacaactttgcc
gcggttggaacactgtatcgctatggcaatggcatgagaggggctgagactccgatgaga
gatttcagagcaactccgctccattcgttcatgactactccgatgagagatcctaatgca
actccgcttcattcgtatatgacgtctccgatgagagaccccagagcaactcccatccat
gatggcatgaagactccaatgctcttctga
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