Pyrus communis (pear): 137721704
Help
Entry
137721704 CDS
T10779
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
pcox Pyrus communis (pear)
Pathway
pcox03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137721704
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcox03041
]
137721704
Enzymes [BR:
pcox01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137721704
Spliceosome [BR:
pcox03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
137721704
Complex C
U5 SnRNP specific factors
137721704
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
AAA_11
T2SSE
ATP-cone
Motif
Other DBs
NCBI-GeneID:
137721704
NCBI-ProteinID:
XP_068316831
LinkDB
All DBs
Position
17:21415507..21423238
Genome browser
AA seq
2180 aa
AA seq
DB search
MAQHLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPKHFGDRA
YRGRPPELDDKLKKSKKKKERDPNAEPAPVRQSKKRRLHEESVLTATEEGVYQPKTKETR
AAYEAMLSVIQQQLGGQPSSIISGAADEILAVLKNESFKNADKKKEIEKMLNPIPNTVFD
QLVSIGRLITDFQDGGDAGGSAVANGDEALDDDVGVAVEFEENEDDDEESDLDMVQEDDE
EDDDDVAEPHQSGAMQMGGGIDDDEMQEANEGMGLNVQDIDAYWLQRKISEAYEKQIDPQ
QCQKLAEEVLKILAEGDDREVETKLLVHLQFDKFSLIKFLCRNRLKIVWCTRLARAEDQD
ERKKIEEEMLQLGPDLAAIVEQLHATRASAKERQKNLEKSIREEARRLKDESGGDGDRGR
RGLVDRDADSGWLKGQAELLDLDSLAQEQSRLLVSKKCVLPDGSYRHPSKGYEEIHVPAL
KQRPFNPDEKLVNISAMPEWAQPAFKGMTQLNRVQSRVYETALFKADNILLCAPTGAGKT
NVAVLTILQQFALNMNKEDGSINHSDYKIVYVAPMKALVAEVVGNLSNRLKDYGVNVREL
SGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLE
SIVARTVRQIETTKDHIRLVGLSATLPNYEDVALFLRVDLKKGLFYFDNSYRPVPLSQQY
IGIMVRKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALAKDTLG
RFLKEDSASREILTTHTDLVKSNDLKDLLPYGFAIHHAGLNRADRQLVEDLFADGHVQVL
VSTATLAWGVNLPAHTVIIKGTQIYDPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGII
ITGHNELQYYLSLMNQQLPIESQFISKLADQLNAEIVLGTVQNAREACNWIGYTYLYVRM
LRNPTLYGLEADVLSRDITLEERRADLIHSAATILDKNNLIKYDRKSGYFQVTDLGRIAS
YYYITHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVK
ESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVYITQSAGRLLRALFEIVLKRGWAQLAE
KALNMCKMVNKKMWSVQTPLRQFTGISNDILMKLEKKDLAWDRYYDLSSQELGELIRMPK
MGRTLHKFIHQFPKLNLAAHVQPITRTVLRVELTITPDFQWEDKVHGYVEPFWVIVEDND
GEFVLHHEYFLLKKQYIDEDHTLNFTVPIYEPLPPQYFIRVVSDRWLVSQTVLPVSFRHL
ILPEKYPPPTELLDLQPLPVTALRNPLYEALYQDFKHFNPVQTQVFTVLYNSDDNVLVAA
PTGSGKTICAEFAVLRNHQKGSDNVMRVVYIAPIEALAKERYRDWEKKFGKGLNLRVELL
TGETATDLKLLEKGQIIISTPEKWDALSRRWKQRKHVQQVSLFIVDELHLIGGQGGPILE
VIVSRMRYIASQPENKIRIVALSTSLANAKDLGEWIGASSHGLFNFPPGVRPVPLEIHIQ
GVDLANFEARMQAMAKPTYTAIVQHAKNGKPALVYVPTRKHVRLTAVDLMTYSNADGGEK
PSFLLRSVDDIEPFIERLGDEILKGTLRSGVGYLHEGLSSLDQEVVSQLFEAGWIQVCVM
SSSMCWGVPLSAHLVVVMGTQYYDGRENVHTDYPVTDLLQMMGHASRPLLDNSGKCVILC
HAPRKEYYKKFLYEAFPVESHLHHYLHDNLNAEVVAGIIENKQDAVDYLTWTFLYRRLTQ
NPNYYNLQGVTQRHLSDHLSELIENTLSDLEASKCVAIEDDMDLSPLNLGMIASYYYISY
TTIERFSSSLTSKTKMKGLLEILTHASEYSQLPIRPGEEEVVRRLINHQRFSFDNPKCTD
PHVKANALLQAHFARQPLGGNLALDQREVILSASRLLQAMVDVISSNGWLSLAVLAMEVS
QMVTQGMWDRDSMLLQLPHFTKELAKRCQENPGKSIETVFDLVELDDDERRDLLQMSDSQ
LLDIARFCNRFPNIDMVYEVLDRDNIRAGEEITLLVTLERDLEGRTEVGPVDALRYPKAK
EEGWWLVVGDTKTNSLLAIKRVSLQRRVKVKLEFAAPAEPGEKSFILYFMCDSYLGCDQE
YDFTLDIKDAAGPDDDSGSE
NT seq
6543 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagcacttgggcggcggtgcggaggcgcacgcccggttcaagcaatacgagtac
cgtgctaactcgagtttggtgctgaccaccgactctcgcccacgtgacacgcacgagccc
accggcgagccggagtctctatggggaaagattgaccccaagcatttcggtgaccgggct
tacaggggaaggccgccggagctcgatgacaagcttaagaagtcgaagaagaagaaggag
cgggacccgaatgctgaacctgctccagttcggcagagtaagaagcggcggcttcatgaa
gagagcgtgctcacggccactgaggaaggggtttatcagcctaagaccaaggaaactagg
gctgcctatgaggctatgctcagcgtcattcagcagcagctgggtggccagccttcgagt
atcataagtggcgctgcggacgagattttggccgttcttaagaacgagagctttaagaat
gctgataagaaaaaggagattgagaaaatgttgaatcctatacccaacaccgtctttgat
cagttggtttcaattgggaggttgattactgacttccaagatgggggtgatgctggaggg
tctgccgtggctaatggtgatgaagccttagatgatgatgtgggtgttgcggttgagttt
gaagaaaatgaagatgatgatgaggagagtgatcttgatatggtgcaggaggacgacgaa
gaggacgacgatgatgtggctgaaccacatcaatctggggctatgcaaatgggtggtggg
attgatgatgatgaaatgcaggaagcaaacgagggtatgggccttaatgttcaggacatt
gatgcttattggcttcagaggaagatatctgaagcttatgagaaacagattgatccacaa
caatgccagaagcttgctgaagaggtgctcaagatacttgctgaaggtgatgacagggaa
gttgaaaccaagctgttggttcaccttcagtttgacaaattcagccttattaagtttcta
tgtcgaaacaggctgaagattgtctggtgcacgcgtttggccagagccgaagaccaagat
gagaggaagaaaattgaggaggaaatgctgcagttgggtccagatttggctgcaattgta
gaacagctgcatgccacaagggctagtgcaaaggagaggcaaaagaacttggagaagagt
attagagaagaggctcgcaggttgaaggatgagagtggtggagatggagacaggggtagg
aggggccttgtcgatagagatgctgacagtggttggttgaaggggcaggcagagctactt
gatcttgacagccttgcacaagagcaaagtagacttttggtgtcgaagaagtgcgtgctt
ccagatgggtcttacagacatcccagcaagggatatgaagaaatccatgtgccagccttg
aaacagagaccatttaatcctgatgagaagcttgtaaacatatctgccatgccagagtgg
gctcagccggctttcaaaggaatgacccagttgaacagggtacagagtagagtctatgag
actgcccttttcaaagcggacaatatcctgctatgtgctcctactggtgctggaaaaact
aatgttgcagtgctcactatacttcagcagtttgcgctgaacatgaacaaggaggacggt
tccataaaccacagtgattataagattgtatatgttgcgcctatgaaagctcttgttgcg
gaagttgttggaaatctttctaatcgtttgaaggattatggtgtcaatgtgcgggagcta
agtggtgaccagacattgactcgccaacagattgaagaaactcaaattattgtgacaacc
cctgagaagtgggatatcattacccgaaagtcaggagaccggacttacactcaactggtc
aaacttcttatcattgatgaaattcatctccttcatgataatagaggccccgttcttgaa
agtattgttgctagaactgttaggcagattgagaccacaaaagatcatattcggttggtg
gggttatctgctactctccctaactatgaagatgtggcattgttcttgcgtgttgacctt
aagaagggactgttttattttgataacagttacagacctgtccccctatctcaacagtat
attggaatcatggtgaggaaaccattacagaggttccagttgatgaatgatctctgctat
gagaaggtcgtagctgtagctggaaaacatcaagtccttatctttgtccattcgaggaaa
gaaacagccaaaacagctcgtgctataagagatactgcacttgccaaggacacccttggc
aggtttcttaaagaagacagtgctagccgagagattctaactactcatacagatttggtc
aagagcaatgatctcaaagatcttctgccgtacggttttgccattcatcatgctggattg
aacagggcagatcgccaactggttgaggatctctttgctgatgggcacgtacaagttttg
gtttcaacagcaacacttgcttggggcgtgaatctgccagctcacactgtgataatcaag
gggactcagatctatgatccagaaaagggagcatggactgaactaagtcctttggatgtt
atgcagatgttggggcgtgcaggaagacctcagtacgattcatatggagaagggattatc
attactggccacaatgagcttcagtactatctttctttgatgaaccaacagcttcccatt
gaaagtcaattcatatccaaattggctgaccaacttaatgctgaaatcgttcttggaact
gttcaaaatgctagagaagcttgcaattggataggatacacttacctgtatgttcgcatg
ctacggaaccccacactctatggtttggaagctgatgttctctccagagatattacattg
gaggagagacgagctgatttgatccattccgctgcaaccatcttggacaagaataatttg
attaagtacgacagaaaaagtggatatttccaagttacagacttgggtcgcattgcgagt
tattactatataactcatggaacaatatccacatataatgagcatttgaagcctacgatg
ggggatattgagctttgtcgattgttctcgctcagtgaagaatttaagtatgttactgtg
cggcaggatgaaaagatggagttagcaaagcttttggatcgtgttcccattccggtgaag
gaaagcctggaagagcccagtgccaagatcaatgtcttgctgcaagcatatatctcacag
ctgaagcttgaggggctttcattgacatcagatatggtctacattactcagagtgcaggg
cgtcttctacgagctctttttgagattgtcttgaaacgaggatgggctcaactagctgaa
aaggctttgaacatgtgtaagatggttaacaagaagatgtggagtgtccaaacacctctt
cgccaattcactggtatttcaaatgatattttgatgaagctggagaagaaggatttggcc
tgggataggtattatgatctctcttcacaggagctaggggagcttattcgtatgcctaag
atgggaagaacacttcataagttcatccaccaattccccaaattaaaccttgcagcccat
gtgcagccgattactcgcactgtattgagggtggagctcactataacgccagatttccaa
tgggaggacaaagttcatggatatgtagagccattttgggtaatagtggaggataatgat
ggcgagtttgtccttcatcatgaatattttcttctgaagaagcagtatattgatgaggat
catactttgaactttacagtgccaatatatgagcctcttccgcctcagtacttcattcgt
gttgtgtctgataggtggcttgtgtcccagactgttttacctgtttctttcagacacctc
attttacctgaaaagtatcctccaccaacagagttattggacttgcaaccacttcccgtg
actgcattaaggaatcccttatatgaagctctgtatcaagatttcaagcatttcaatcct
gttcaaactcaggttttcactgttttgtacaattcagatgacaatgtcttagttgctgca
ccaacagggagtgggaagaccatatgtgcagagtttgctgtattgaggaatcatcagaag
ggctctgataatgtcatgcgtgttgtgtatattgcacctattgaagctcttgctaaggaa
cgttaccgtgactgggagaagaagtttggaaagggtctcaatctgcgagttgaattatta
acaggggaaacagccacagacttaaaactgcttgagaaaggtcagattatcatcagcact
ccagagaaatgggatgctttatcccgccgctggaaacagagaaagcatgttcaacaggtt
agtctttttattgtagatgaactacacttgattggtggtcagggtggtcccatcttggag
gtaatagtctctagaatgagatacatagcgagtcaacctgagaacaagattcgtattgtg
gctctgtcaacttctcttgcaaatgcaaaggatcttggagaatggataggggctagctcc
catggccttttcaattttcctcctggtgtgcgcccagtgcctctggaaatacacattcag
ggggtggatctggctaatttcgaagccaggatgcaagcaatggcaaaacccacatacaca
gcaattgtccagcatgccaagaatgggaaaccagctcttgtttatgttcctacaaggaaa
catgttcgactaacggctgtggatctgatgacctactcaaatgcagacggtggggagaaa
ccgtcatttctgttgcggtctgtggatgatattgagcctttcattgaaagacttggtgat
gaaattttgaaaggcactttgcgcagtggagtgggctacctgcatgaaggtttaagcagt
ttggaccaagaagttgtgtcacagctgtttgaagctgggtggattcaagtttgtgtcatg
agcagttcaatgtgctggggagtgccgttgtcagcccatttggtggttgtgatgggaact
cagtattatgatggccgggaaaatgttcacactgattaccctgttactgatctgttgcag
atgatgggtcatgctagtcgccctctgctagataattctgggaaatgtgtcatcctctgc
cacgcgcctcgtaaagaatactacaagaagttcttgtacgaagcattccctgttgaaagc
catttgcaccattatctacatgataatctgaatgcagaagttgttgcaggaataattgag
aacaagcaagatgctgtcgattaccttacatggactttcttgtaccggaggctcacacaa
aatcccaactattacaatcttcagggagttactcagcggcatctttctgatcacctctcg
gagcttattgaaaatacactgagcgacttggaggcgagcaagtgtgttgcaatcgaggat
gacatggacctttctcctttgaatcttggcatgatagcttcatactattacatcagttat
accaccattgagcgtttcagttcatctttaacttccaaaacaaagatgaagggtcttctt
gagattctaactcatgcttcggagtattcacaacttcctattcgaccaggggaggaagag
gtagttcggaggctaattaaccaccagaggttttcctttgataatcccaaatgcacagat
cctcatgttaaagcaaatgctctgcttcaggcccactttgctaggcagcctctgggtggt
aacctagctttggaccagcgagaggtgatcctttccgctagtaggttgcttcaggcgatg
gttgatgtcatttccagcaatggctggctaagcctggctgtcttagccatggaagtcagc
cagatggtaactcagggcatgtgggacagggactcgatgcttctacagcttcctcacttc
acaaaggagttggcaaagagatgccaggaaaatccaggaaagagtatagagactgtgttt
gatttggttgagttggacgatgatgaaaggcgcgacctacttcaaatgtcagactcgcag
ctgctggatattgcacgattttgcaaccgctttcccaacattgatatggtatatgaggtg
cttgatagggataacataagggccggggaagaaatcactctgctagttactctcgaacgt
gaccttgaagggaggactgaggtaggtcctgtggatgccctgaggtatcccaaggcaaaa
gaagagggctggtggcttgtggtcggcgataccaagacaaactcgttgctcgccatcaag
agagtttcgctgcaacggagggtcaaggtgaagctcgagtttgctgctcctgccgaaccc
ggagagaagagtttcattctttatttcatgtgtgattcatatttgggatgcgatcaggaa
tatgatttcactcttgatattaaagatgcagcagggcctgacgacgacagcggcagcgaa
tga
DBGET
integrated database retrieval system
