Pyrus communis (pear): 137722455
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Entry
137722455 CDS
T10779
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pcox Pyrus communis (pear)
Pathway
pcox03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137722455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcox03019
]
137722455
03012 Translation factors [BR:
pcox03012
]
137722455
Enzymes [BR:
pcox01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137722455
Messenger RNA biogenesis [BR:
pcox03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
137722455
Translation factors [BR:
pcox03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
137722455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
ATPase
AAA_19
T2SSE
AAA_16
Myosin_head
AAA_23
PhoH
ABC_tran
ATPase_2
Motif
Other DBs
NCBI-GeneID:
137722455
NCBI-ProteinID:
XP_068317559
LinkDB
All DBs
Position
17:7163140..7176430
Genome browser
AA seq
1156 aa
AA seq
DB search
MRNSRAALGLLLRSVSNNNPCCFPSSRKTNGRCRTLLLLLQPHSSSSISDGGARFLISKR
AFCGYAAEQFSDDEYACEFEGQKASSSVANIDEWKWKMSLLLRSEKDHEIVSRDKRDRRD
YEQISNLAKRMGLYCEIYGKAVVASKVPLPNYRPDLDDKRPQREVVIPLGLQRRVEGLLQ
EHLDRLQLNSGKFTGNRGDSEQIGQVENANLDENADSFLDGSVMEKVLQRRSLRMRNMQR
AWQESPEGKKMLDFRKSLPAFKENERLLQAIAQNQVIVISGETGCGKTTQLPQYILNSEI
ESGRGAFCSIICTQPRRISAMAVAERVSAERGEPLGETVGYKVRLEGMKGKNTHLLFCTS
GILLRRLLSDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLVLMSATLNAE
LFSSYFGGAPTIHIPGFTYPVRAHFLEDVLEMTGYKLTSFNQIDDYGQDKLWKTQKQLVP
RKRKNQITALVEDALNKSSFESYSARARDSLSCWTPDCIGFNLIEAVLCHICRKERQGAV
LVFMTGWEDISSVRDQLKAHPLLGDPNRVLLLTCHGSMGTSEQKLIFGRPPPNIRKIVLA
TNMAEASITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISQASARQRRGRAGRVLPGE
CYHLYPKCVYHAFAEYQLPELLRTPLNSLCLQIKSLQVASIGEFLSAALQPPEPLAVQNA
IGFLTSIGALDENESLTSLGKYLSILPVDPKLGKMLIMGAVFHCFDPVLTIVSGLSVRDP
FLLPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQ
AIHSLRKQFNYILRDAGLVDADASINNKLSHNQSLVRAIICSGLFPGIASVVHRETSMSF
KTMDDGQVLLFANSVNARYQTIPYPWLVFGEKVRVNTVFIRDSTGVSDSILILFGGALNH
GVQAGHLRMLDGYIDFFMDPSLVDCYLKLKEELNELIQKKLEDPSLDIHKEGKYLMLAVQ
ELVSGDQCEGRFVFGRDSRKPKESGDNSRFTKDGTNPKSLLQTLLMRAGHSPPKYKTKHL
KTNEFRALVEFKGMQFVGKPKKNKQLAERDAAIEALAWLTHTSENHRDEEDNSPPDITDN
MLKLLGKRRRSKRQSG
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgcgtaattcgagagcagcacttggtctccttctcaggtcagtctccaacaataaccct
tgttgttttccttcttcccgcaagacaaacggtcgctgccgcactttgcttcttctactc
caaccccactcttcttcttcaatttccgacggcggagcccgattcctcatttcaaagcgc
gccttttgcgggtacgccgccgagcagttctccgacgatgagtacgcgtgcgaattcgaa
ggccaaaaggcatcgtcttcagtggcgaacattgacgagtggaaatggaaaatgagcttg
ctattacgcagcgaaaaggaccatgagattgtatccagagataagagagataggagagac
tatgagcagatatctaaccttgccaaaaggatgggactttattgtgaaatatatgggaaa
gcggtggtggccagcaaggtccctcttccaaactacaggcctgatttggatgataagcgg
ccacaaagagaggtggttatccctcttggcttgcaaaggagggtagagggtttgctgcaa
gagcacctcgatcgactccagttaaactctgggaagttcactggaaatagaggggactct
gagcaaattggtcaggtcgaaaatgcaaacctggatgagaatgcagattcttttctagat
gggtctgtaatggagaaggttcttcaaagaaggagtttgcgaatgcgtaatatgcaaaga
gcttggcaggaatcacccgaaggcaagaagatgctagacttccgcaaatcactaccggct
ttcaaggagaatgaaaggttgctgcaagcaattgcacagaatcaggtaatagtgatatct
ggggagactggatgtggtaagaccactcaacttcctcaatatatcctaaattcagaaata
gaatctggccgtggagcattctgtagcatcatttgcacacagcctcgaagaatatctgct
atggctgttgcagaaagagtgtccgcggagaggggagagcctcttggtgaaacagttggc
tataaagttcgattggagggaatgaagggaaaaaatacccatctgcttttttgtacaagt
ggtattttacttcgccgtctgttgagtgatcgtaacttgaatggtataacccatgttttt
gttgatgaaattcatgagcgaggcatgaatgaagatttcttattgattgtgctgaaggat
ctgcttccacgccgtcgggatttgagattggttttaatgagtgctactctgaatgctgag
ctgttttcaagttattttggaggagctcctacaattcatattccgggctttacatatcca
gtaagagcacactttttagaagatgtactggaaatgactgggtataagttgacttccttc
aaccaaattgatgattatggccaagacaaactgtggaaaacacagaagcagttagtgcct
cgaaaaaggaaaaaccagattactgctctggttgaggatgctcttaataaatcaagcttt
gagagttacagtgccagggcacgtgattcactatcatgttggacacctgattgcattgga
tttaatttaattgaggcagttttatgtcatatatgtcggaaggaaagacaaggtgctgtt
ttagtattcatgactgggtgggaggatataagctctgtgagggatcaacttaaagcacat
ccacttttaggtgatcctaacagggttttgcttctaacatgccatgggtcaatgggaaca
tctgaacagaaactcatatttggaagaccacctcctaacattcgtaaaatagtccttgca
acaaatatggcagaagcaagtattacaatcaatgatgtagtttttgtggtggattgtgga
aaagcaaaagagacctcgtatgatgctttgaataatacaccttgtctgctaccttcttgg
atatcgcaagcatctgctcggcaaagaaggggtagggctggccgggtgctgccaggtgaa
tgttaccacctttaccccaaatgtgtttatcacgcttttgctgaatatcaacttcctgaa
ctgctcagaactcctttgaactctctttgcttgcaaattaaaagtttgcaggttgctagt
ataggggaattcttgtcagctgccttgcagccaccggaacccctagctgtccaaaatgcc
attggttttcttacttcaattggggcattagatgagaatgaaagtttgacaagtctcgga
aaatatttgtcaatacttccagtggatcccaaactggggaaaatgctgattatgggtgct
gtgtttcattgctttgatcctgttcttacaatagtgtctggtctaagtgtcagggatcct
ttccttttgcctcaagacaaaaaagatttagcagggacagcaaaatctagattctctgca
aaagattacagtgatcatatggctcttgttcgtgcatatgaaggatggaaagatgctgaa
agagaaggatcagcatatgaatattgctggagaaatttcctttctgctcaaacacttcag
gctatccattctcttcggaagcagtttaactacattttaagagatgctggattggtggat
gcggatgcaagcattaacaacaagctaagtcacaaccagtccttggttcgtgcaatcata
tgttctggacttttccctggaatagcatctgtggtgcaccgagagacgtccatgtcattc
aaaacgatggatgatggccaggttctactatttgctaattctgtgaatgcgcgttaccaa
acaattccttacccctggttggtctttggtgaaaaagtaagggtcaatactgtattcata
cgtgattccactggcgtatctgattcgatcctgatcctttttggtggtgcgttgaaccat
ggggtccaggctgggcatttgagaatgttggatggttatatcgacttcttcatggatcct
agtttggtggactgctatttgaagcttaaggaagaacttaatgagcttattcaaaagaag
cttgaagatcctagccttgatatccacaaggaagggaagtacctgatgcttgctgttcaa
gagctggtttccggagatcaatgtgaagggagatttgtatttggtcgtgacagcagaaag
ccgaaggaatctggtgataacagtagattcactaaagacggaaccaatcctaagagtttg
cttcaaactctgttgatgagagcaggacattctcctccaaaatacaaaacaaagcacctt
aagacgaacgagttcagagcactggtggagttcaagggcatgcaatttgtcgggaaacct
aagaaaaataagcagcttgcagaaagggatgctgctatagaagcactggcctggttgact
cacacctcagaaaaccatcgtgatgaagaagacaactccccccctgacatcactgacaac
atgctcaaacttctcgggaaacgtagaagatcaaaacggcagtctggttga
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