Pyrus communis (pear): 137722501
Help
Entry
137722501 CDS
T10779
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
pcox Pyrus communis (pear)
Pathway
pcox03440
Homologous recombination
pcox03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
137722501
03450 Non-homologous end-joining
137722501
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcox03032
]
137722501
03400 DNA repair and recombination proteins [BR:
pcox03400
]
137722501
DNA replication proteins [BR:
pcox03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
137722501
DNA repair and recombination proteins [BR:
pcox03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
137722501
BRCA1-C complex
137722501
NHEJ (non-homologous end-joining)
MRX complex
137722501
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_21
AAA_15
SbcC_Walker_B
SMC_N
AAA_29
Rad50_zn_hook
ABC_tran
AAA_16
AAA_13
AAA_22
Motif
Other DBs
NCBI-GeneID:
137722501
NCBI-ProteinID:
XP_068317618
LinkDB
All DBs
Position
17:1176194..1189549
Genome browser
AA seq
1315 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPENKHVITFFKPLTLIVGPNGAGKTTIIECLKLSCSGELPPNAR
SGHSFVHDPKVAGETETKAQIKLRFRTAAGKDVVCIRSFQLTQKASKMEFKAIDSVLQTI
NPHTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKDQAQEIKTYKLQLENLQTKKDIAYKHREQISQAQEKANFLKS
EMQGLEGMIQDVNTKIQYTDTKLKDLKKLEDQISQKTAVRSTLVNEREEKHKALEEENED
TDEELKEWKTKFEEKIALLETKIRKLEREENDAESKITFLEKTLKESIREISKLENEAEV
HLCSKNERDSIIQKLFSRHNLGALPNPPFTNEVALNLTNRIKSRLLDLEKDLQNKKMSNE
KELETTWDCYNDVKDRWKSIEAQKEAKEEIKNGLLKRIEEKKNERDSLELEVSNVDLSHI
DEKEKNMHIELERKTNQYAKREFESTIRQKYNEMFSIEQMITVAKKEKVAMAVDTEDRTK
LSMKKNDLENRKRQHGKIINENRERVRGVLKGRFPPEKDLRGEISKVLSAVTMEFDDLST
KSREAENEVNMLQTRIQEINNNIYKHRKDMDSKRRYIESKLQALDQQSFTVDYYPTVLDS
AKEKRDVEKRKYNFADGMRQMFDPFERVARANHICPCCERPFSLQEEDEFVKKQRMNAAS
SAEKLKVLAAESSTADSFFQQLDRLRMVYEEYVNIGKERIPNAERELHDLNQEMEQKSYA
LDDVLAVLAQVKAEKDSIQALMEPIENADRLFQDIQREQKLVDELAHKLEQGHGARSMQD
IETELDNLLETKDNLHREVMQLRTEQTELQDDLSAVRNRWHNIREEKVKAANLLSDVKRA
EEELERLTEEKNRVDLDEKLLAESLRPLSKEKDKLLGYHNDLKVKLNREYDDQAERKREY
EQEVEALNMINLKIKEYNDSKKGEKLQEIQEKQHLLESQLQSCKTRKKEILAELNKSKDL
RGKQDQVRRNIEDNLSYRKTKAEVEELTHELESLEDKMLKIGRKPKVQAELEKLSHEREE
FLKRLNQNEGIISAHQSEISKHKIDLKNPDYKDIDKRYFDQLIQLKTTEMANKDLDRYYN
ALDKALMRFHSMKMEEINKIIRELWQQTYRGQDIDYICIHSDSDGAGTRSYSYKVLMQTG
DTELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNADSLAAALHR
IMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEAQEIFD
NT seq
3948 nt
NT seq
+upstream
nt +downstream
nt
atgagtacggtggacaagatgctaataaagggaatccggagcttcgacccggagaacaag
cacgtcatcaccttcttcaagcccttaaccctaatcgtcggccccaacggcgccggcaaa
accaccattatcgagtgcttgaagctctcctgctccggcgagttgcctcccaacgctcgc
tccggccatagcttcgtccatgaccctaaggtcgccggcgaaaccgagaccaaagcccag
attaagctccgcttcaggaccgccgccggcaaagatgtggtgtgcattaggtcgtttcag
ctcacgcagaaggcctcgaaaatggagttcaaggccatcgacagcgtccttcagaccatt
aatccccacactggagagaaagtttgccttagttatcgatgtgccgatatggatagggaa
atccctgctttaatgggtgtgtcaaaggctatcttagaaaatgttatatttgtgcaccaa
gatgaagccaattggcctttgcaggatccttcaacattgaagaagaagtttgatgatatc
ttctctgctacccgatatactaaggcattggaggtaattaaaaaacttcacaaggatcaa
gctcaagagataaagacctacaagctacagttggagaatcttcaaaccaaaaaagatatt
gcatataagcatcgcgagcaaatttctcaagctcaagaaaaagcaaattttttgaaaagt
gagatgcaggggttggagggaatgatccaagatgtgaatactaaaattcagtatactgac
acaaaactaaaggatttgaagaagctggaggaccagatatcacagaaaactgccgtgaga
agcaccctggttaacgagcgggaggagaagcacaaagctcttgaagaggagaatgaagac
actgatgaagaattgaaggaatggaaaaccaagtttgaagaaaagattgcgcttttggaa
actaaaatcaggaagttggagagggaagagaatgacgcagagagcaaaattactttcctt
gaaaaaacgcttaaggaatctatacgggagattagcaagctcgaaaacgaagctgaagtt
catttgtgctcaaagaatgagagagattctatcattcaaaagctcttttcaaggcacaat
ttgggtgctcttcctaatcctcccttcaccaatgaagttgctctgaacctcaccaatcga
ataaaatcaaggttgttggatctagaaaaggatttgcaaaataagaagatgtcaaatgaa
aaagaacttgagacaacatgggactgctacaatgatgtaaaagaccgttggaagtctatt
gaggctcagaaagaagctaaagaagaaataaagaatggccttctgaagcgcatagaggaa
aaaaagaatgagcgtgattctttagaacttgaagtttcaaatgttgatctttctcacatt
gatgaaaaagaaaaaaatatgcatattgagcttgagagaaagacaaaccagtatgctaaa
agggaatttgaatcaacaatacgccaaaagtataatgagatgtttagcatcgagcaaatg
attacagttgctaagaaagagaaagtcgccatggctgttgatacagaggacagaacaaaa
ctgtctatgaagaagaatgatttggagaaccgcaaaaggcaacatggaaagattattaat
gaaaacagggagagagttagaggagtgctaaaagggaggtttcctccagagaaggatttg
agaggcgaaatcagtaaagtattgagtgctgttaccatggagtttgatgacttgagcacc
aaatctcgtgaagcagagaatgaggtgaatatgctgcagacaagaatacaagaaattaac
aataacatctacaagcatcggaaagatatggactcaaagaggagatatattgagtctaaa
cttcaggccttagatcagcaatcttttactgttgattactatcctacagtcttggattca
gccaaggagaaaagagatgtcgagaaaaggaaatacaattttgcggatggtatgcgacaa
atgtttgatccatttgaaagagttgcccgtgccaatcatatttgcccttgctgtgaacga
cctttttctctacaagaggaagacgaatttgttaaaaagcaaagaatgaatgctgcaagt
tctgctgagaaattaaaagtgctggctgcagagtcctcgactgctgactctttttttcag
caattggacaggcttcgcatggtttatgaagaatatgttaacattgggaaggaaagaatc
cccaatgctgagagagaactgcatgaccttaatcaagagatggaacaaaagtcttatgcc
cttgatgatgtgttagcagttttggctcaagtaaaggctgaaaaggactcgattcaggcc
ctgatggaacccattgaaaatgctgacagactatttcaagatatacaaagagaacagaag
ctagtcgatgagctggcacataaacttgaacaaggccatggtgcgagatctatgcaagat
attgagacagagctggataatctgctagagacaaaggataatttgcatagagaagtaatg
cagttgagaaccgaacaaacggaattacaagatgatttgagcgcggtccgaaatcggtgg
cacaacataagggaagagaaagtcaaagcagctaatttattgtccgatgtcaaaagggca
gaagaagagttggagcgtttgaccgaagaaaagaatcgagttgatcttgatgaaaagctt
ttggcagagtctcttcgccctttatcgaaggagaaagataaattacttggctaccataat
gacttaaaagttaaacttaatcgtgaatatgatgatcaagctgaacgaaaaagagaatac
gagcaggaagttgaggcattaaatatgattaatttgaaaattaaagagtataatgattca
aagaaaggtgagaagttgcaggaaatccaagaaaagcaacatctgcttgaatctcaactt
caaagttgtaaaactagaaagaaggaaatcttagctgagttgaacaaaagcaaagattta
agagggaaacaagatcaggtaagacgaaatattgaggataatttgagttacaggaaaacg
aaagctgaagtagaggaacttacccatgagcttgagtcactggaagacaaaatgctgaag
attggtcggaagcccaaagttcaagctgaacttgaaaagctctctcatgagagggaggag
tttctgaaaaggttaaaccagaatgaggggatcatttctgctcaccagagcgaaatttca
aagcataaaattgatctcaaaaacccagattacaaggacattgacaagcggtactttgat
cagctaatccaactaaagacaactgagatggcaaacaaggacctggacagatattacaat
gcgcttgacaaagcattaatgcgcttccacagcatgaagatggaggaaataaataaaatt
ataagagagttgtggcagcaaacataccgaggacaagatatagactacatctgtatacac
tcagattctgatggtgctgggactcgttcttacagttacaaggttctcatgcagactggt
gatacagagctcgaaatgagaggaaggtgtagtgctggtcagaaggtccttgcctccctc
atcataagattggctttggctgaaactttctgcctcaactgcggaatactagcactagat
gaaccaactacaaacttggatggcccgaatgctgatagtcttgccgctgctctccacaga
attatggaggaccggaagggccaggagaactttcagctgatagtaattactcatgatgag
cgtttcgctcaactaattggccagcgccagcatgcagaaaaatattatcgggtggcaaag
gatgatcaccagcatagcataatcgaagcccaggagatctttgattga
DBGET
integrated database retrieval system
