KEGG   Pyrus communis (pear): 137722709
Entry
137722709         CDS       T10779                                 
Name
(RefSeq) sm-like protein LSM5
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
pcox  Pyrus communis (pear)
Pathway
pcox03018  RNA degradation
pcox03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pcox00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    137722709
  09123 Folding, sorting and degradation
   03018 RNA degradation
    137722709
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pcox03019]
    137722709
   03041 Spliceosome [BR:pcox03041]
    137722709
Messenger RNA biogenesis [BR:pcox03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     137722709
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     137722709
Spliceosome [BR:pcox03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    137722709
SSDB
Motif
Pfam: LSM DUF7452
Other DBs
NCBI-GeneID: 137722709
NCBI-ProteinID: XP_068317882
LinkDB
Position
2:complement(12740944..12743230)
AA seq 88 aa
MAANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITPEG
RRITKLDQILLNGNNIAILVPGGSPEAE
NT seq 267 nt   +upstreamnt  +downstreamnt
atggccgccaacaatccttcgcagctactcccatcagagttgatcgaccggtgcataggc
tcgaagatatgggtgataatgaagggagacaaggagctcgtagggactctgaggggtttc
gatgtctacgtcaacatggtactcgaagacgtcaccgaatatgagattactcctgaagga
agacgtataaccaagcttgatcagattttactcaacggaaacaatattgccattctggtc
cctggcggctcacctgaagcggaatga

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