KEGG   Pyrus communis (pear): 137723025
Entry
137723025         CDS       T10779                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
pcox  Pyrus communis (pear)
Pathway
pcox03030  DNA replication
pcox03410  Base excision repair
pcox03420  Nucleotide excision repair
pcox03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pcox00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    137723025
   03410 Base excision repair
    137723025
   03420 Nucleotide excision repair
    137723025
   03430 Mismatch repair
    137723025
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pcox03032]
    137723025
   03036 Chromosome and associated proteins [BR:pcox03036]
    137723025
   03400 DNA repair and recombination proteins [BR:pcox03400]
    137723025
DNA replication proteins [BR:pcox03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    137723025
  DNA Replication Termination Factors
   ELG1-RFC complex
    137723025
Chromosome and associated proteins [BR:pcox03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    137723025
DNA repair and recombination proteins [BR:pcox03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     137723025
  Check point factors
   HRAD17(Rad24)-RFC complex
    137723025
SSDB
Motif
Pfam: RFC_C DNA_pol3_delta2 RCF1-5-like_lid AAA Rad17 Sigma54_activ_2 Mg_chelatase DUF815 RuvB_N RsgA_GTPase ABC_tran AAA_29 AAA_22 AAA_23 AAA_5 AAA_2 AAA_24 T2SSE AAA_16 SprT-like DUF1687
Other DBs
NCBI-GeneID: 137723025
NCBI-ProteinID: XP_068318280
LinkDB
Position
17:3199234..3205961
AA seq 354 aa
MLWVDKYRPKTLDQAIVHQDIAQNLKKLVAEQDCPHLLFYGPSGSGKKTLIIALLRQVFG
PSADKVKVENRAWKVDAGSRTIDIELTTLSSTNHIELNPSDAGFQDRYIVQEIIKEMAKN
RPIDTKGKKGYKILVLNEVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSKVTEAIRSR
CLNVRINAPTEDQIVKILEFIGKKEALQLPSGFTARIAEKSNRSLRRAILSIETCRVQQY
PFTSNQSIPPMDWEEYVSEIASDIMKEQSPKRLYQVRQKLYELLLNCIPPEIILKRLLCE
LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHLEAFVAKFMSIYKAFLIEAFG
NT seq 1065 nt   +upstreamnt  +downstreamnt
atgctgtgggtagacaagtaccgacccaaaaccctagaccaggcaattgtccaccaagac
atcgcccaaaacctcaagaaactcgttgcagagcaggattgtccccatttgctcttttat
ggcccttctggctccggcaagaaaaccctcatcatcgccctcctccgtcaggttttcggt
cccagcgccgataaggtgaaagtggaaaatagggcatggaaagttgatgctgggagcaga
accattgatatagagttgactacattgtcaagcacaaaccatattgaattgaaccccagt
gatgcaggctttcaggacagatatattgtccaagagataattaaagaaatggctaaaaat
aggcccattgacacaaaagggaaaaaaggatataaaatcttagtgctgaatgaagttgac
aagctttcaagagaagcgcagcattctcttcgaagaactatggagaaatatagtgcttat
tgccggctaatactatgctgtaacagttcttcaaaggttactgaagcaatccggtctcgg
tgtttaaatgtgcgaataaatgcgccaacagaagaccagattgttaagatattggagttc
attggaaagaaggaagcgctgcaacttccttctggattcactgctcgtatagctgaaaaa
tcaaataggagcttaaggagagctatattgtcaatagaaacttgtcgtgtccaacagtat
ccctttacaagtaaccaatcaatacccccaatggactgggaggaatatgtttctgaaatc
gcctctgatataatgaaggagcagagcccaaaaaggctttatcaggtgcggcagaagctg
tatgagctacttctaaattgtattcctccagagatcatcttgaagaggctgctttgtgag
ttattgaagaaattggatgcagaactgaagcatgaggtctgccattgggctgcatattac
gaacacaggatgcgtcttgggcagaaagcaatatttcaccttgaagcattcgtggcgaag
ttcatgagcatctataaggcttttctcattgaagcgtttggctga

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