Pyrus communis (pear): 137725499
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Entry
137725499 CDS
T10779
Name
(RefSeq) pre-mRNA-processing factor 39-1-like isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
pcox Pyrus communis (pear)
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcox03041
]
137725499
Spliceosome [BR:
pcox03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
137725499
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_16
UTP6_C
TPR_7
NRDE-2
TPR_12
Motif
Other DBs
NCBI-GeneID:
137725499
NCBI-ProteinID:
XP_068320308
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All DBs
Position
2:11914225..11923490
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AA seq
824 aa
AA seq
DB search
MADSETVVAQTSDVMGYTSAGYADASSNIAPDTGALHSEATPEFSTTPGGSSIGDGNAYS
ADLNSLMQESQSYTTYETKPAVGVTDASGNVASNENEVLESSQVASYDSSMNGVIASGVG
TVSSVDNGDASDNAKPLDPQQFGDASAMSVEEDRLWNIVRANSLDFNSWTALIEETERVA
EDNILKIRKVYDAFLAEFPLCYGYWKKYADHEARLGSIDKVVEVYERAVQGVTYSVDIWL
HYCIFAINTYGDPDTVRRLFERGLAYVGTDYLSFTLWDKYIEYEYMQQEWGRLAMIYSRI
LENPNQQLDRYWNSFKELAGSRPLSELRTAEEAAAAAGAHSEGTDKVNGEEVQSDGAEQS
PKPVSAGLTEAEELEKYITIREEVYKKAKEFDSKIISFETAIRRPYFHVRPLNSVELENW
TSYLDYIEREGDLNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDIANNALARATQV
FVKRQPEIHLFAARFKEQSGDIPGAQAAYQLVHSELSPGLLEAIVKHANMEHRLGNVEAA
YSLYEQAIAIEKGKEHSQTLPMLYAQYSRFTYLVSSNAEKAREILDGALEHIQLSRAFLE
SMIVFETIQPLPKRINHIDSLVVKFIEPSSESPNFASVTDREELSGIYLEFVNLFGDAQS
IKKAEDRHAKLFLPHRSSTSELKKRQAEDFLSSDKVKLAKGYSGVPSPVQSVMGAYPNTQ
NQWPSGYGVQPQAWPPATQATQGQQWPAGYTQQPYNAYSGYGAGYTNPQAPAVAPQTAAY
GAYPSTYPPQQAVPPQSYAHPAVAAVAPAPQPASAPQAYYGSYY
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atggcagacagtgagacagttgttgctcaaacatctgatgtgatggggtatacatcagca
ggatatgctgatgccagctcaaatattgctcctgatacgggtgcgttacattctgaggct
accccagagttttctaccacgcctggtggttctagcataggcgatggaaatgcatattct
gcggatctcaattctctcatgcaagaatcacaaagttacacaacatatgagaccaaaccg
gctgttggagtgacagatgctagtgggaatgttgctagtaatgaaaatgaagtcttggag
tcatctcaagttgctagttatgattcttctatgaatggtgttattgcttctggagtggga
actgtttcatcagttgataatggagatgcttcagataatgctaaacctcttgatccgcaa
caatttggggatgcttctgccatgtctgtcgaagaagatagactgtggaatattgtgagg
gctaattccttggatttcaattcctggactgctttaattgaagagacagagagggttgca
gaggataacatattgaaaattcggaaagtttatgatgcatttttagcagagtttccgttg
tgttatggttattggaaaaagtatgcagatcatgaggcacgtctaggttctatcgataaa
gttgtggaggtctatgaacgagcagttcaaggtgttacctattcagttgatatctggttg
cattactgcatttttgctataaacacatatggagatccagacactgtcagaaggttgttt
gagcgaggacttgcttatgttggaacagattacctatcatttactctttgggataagtac
atagaatatgagtacatgcagcaggagtggggccgccttgccatgatctattcacgaata
ttagagaacccaaatcagcaattggatcggtattggaacagttttaaggagttagctgga
agtcggccactctcagaattgaggactgccgaagaagctgcagctgcagcaggtgcacat
tcagagggcactgacaaagtaaatggggaagaggttcaatctgatggtgcagaacaatct
cctaaacctgtaagtgctggtttaacagaagcagaggagttggagaagtatatcaccatt
agagaagaggtgtataagaaagctaaagagttcgattctaagatcattagttttgaaaca
gctattaggaggccctactttcacgtgcggcctctcaattctgtagagcttgaaaattgg
accagctacctagactatatagaaagggaaggcgacttgaacaaggtagtcaagttatat
gaaaggtgcctaattgcttgtgctaattatcctgaatactggattcgatatgttctatgc
atggaggccagtggaagtatggacattgctaataatgctcttgctcgtgcaacccaggtc
tttgtgaagagacaaccggagattcacctttttgctgctcgattcaaagagcagagtggg
gatatacctggtgctcaagctgcctatcaacttgtacattctgaactctcacctggtctt
cttgaagcaatcgtgaagcatgcaaatatggaacaccgtctgggaaatgtggaagcggcc
tactctttgtacgaacaggccattgccattgaaaaaggaaaagagcattcacagacgtta
cccatgttgtacgctcagtactctcggttcacttacctggtttcttcgaatgcagaaaaa
gctagagaaattttagatggggcactcgagcatatacaattgtcaagagcatttcttgag
tccatgatagttttcgagacaatacagccactgccaaagcgaatcaatcacatagattcg
ttagttgtgaagttcatagagcccagctcagagagccccaattttgctagcgttactgac
agagaagagctatctggcatctatttggagtttgttaatctctttggagatgcacagtct
atcaagaaggctgaggatcgacatgctaagctcttcttacctcataggagcagcacatca
gagttgaaaaaacgtcaagcagaggactttttatcttccgataaagtgaagctagctaaa
ggttactctggtgttccatcccccgtccagtcggtcatgggggcatatccaaatacacag
aaccaatggccatctggttacggtgtgcagcctcaagcttggccaccagctacgcaagct
acacagggacaacagtggccagctggttatacccaacagccgtacaatgcatatagtggt
tatggagctggctacactaatccccaagcacccgcggtggcgccacaaactgctgcttat
ggtgcttatccttctacatatcctcctcagcaggccgtcccgcctcaaagttacgcacat
ccagccgtggcagcagtagcaccggctccgcaacctgcttcagctcctcaggcgtattat
gggagttactactga
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