Pyrus communis (pear): 137725527
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Entry
137725527 CDS
T10779
Name
(RefSeq) polyadenylate-binding protein 8-like
KO
K13126
polyadenylate-binding protein
Organism
pcox Pyrus communis (pear)
Pathway
pcox03015
mRNA surveillance pathway
pcox03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
137725527
09123 Folding, sorting and degradation
03018 RNA degradation
137725527
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcox03019
]
137725527
03041 Spliceosome [BR:
pcox03041
]
137725527
Messenger RNA biogenesis [BR:
pcox03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
137725527
mRNA cycle factors
Stress granule specific factors
137725527
Spliceosome [BR:
pcox03041
]
Complex C
Other components
Complex C specific factors
137725527
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_3
RRM_RdRP1_2
RRM_7
PABC_AtC3H46
HobA
Motif
Other DBs
NCBI-GeneID:
137725527
NCBI-ProteinID:
XP_068320347
LinkDB
All DBs
Position
2:21215482..21220632
Genome browser
AA seq
658 aa
AA seq
DB search
MAQVQQVPAQNANAAAAAAAANGGGGANQFVTTSLYVGDLDPNVTDSQLYDLFNQLGQVV
SVRVCRDLSTRRSLGYGYVNFANPQDAARALDVLNFTPVNGRPIRIMYSHRDPSIRKSGS
GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDSVGQSKGYGFVQFDNEEAAQKAIEK
LNGMLLNDKQVFVGPFLRKQERDSTADKSRFNNVYVKNLSESTTEEDLKKVFSEFGITTS
EVVMRDGDGKSKCFGFVNFEKAEDAARAVEALNGKKFDDKEWYVGKAQKKSERENELKQR
FEQSMKEAADKYQGANLYVKNLDDTIADDKLLELFSPFGTITSCKVMRDPSGVSRGSGFV
AFSTPEEANRALLEMNGKMIVSKPLYVALAQRKEDRRARLQAQFSQMRPVAMAPPVASRM
PMYPPGGPGLGQQIFYGQGPPAIIPSQPGFGYQQQLVPGMRPGGAPMPNFFVPMVQQGQQ
GQRPGGRRGGSVQQNQQPVPMMQQQMLPRGRIYRYPSGRGIPDGPMPGVPGGMFSVPYDI
SGGGGMPIRDAALSQPTIPIGALATALANATPEQQRTMLGENLYPLVEQLEPDNAAKVTG
MLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQQAGNAADQLGSLSLNENLVS
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaagttcagcaggtcccggctcagaatgcgaacgcggcagcagcggcggctgcg
gcgaacggtggcggaggagccaaccagttcgtgacgacgtcgctttacgttggcgatctt
gaccccaacgtcaccgattcgcagctctacgacctgttcaaccagctgggtcaggtggtt
tcggttagggtttgcagggacttatccacccggaggtcgcttggctatggctatgtgaat
ttcgccaacccacaagatgctgctagggctttggatgtgttgaactttactcctgtgaat
ggaaggcccattaggattatgtactctcatcgtgatcctagtattcgcaaaagtgggtct
ggcaacatatttattaagaatttggacaaagctattgatcacaaagccttgcatgataca
ttttctgcatttggaaacatcctttcttgcaaggtggctacagactccgttggccagtca
aagggctatggctttgtacaatttgacaatgaagaagctgcccaaaaggctatagagaag
ttgaatggtatgcttttgaatgataagcaagtttttgttggtcctttcctccggaagcag
gaaagggacagtactgctgacaagtcaagattcaacaatgtttatgtaaagaatctatca
gagtcaactactgaggaagatttgaaaaaagttttttctgaatttgggataaccactagt
gaagttgtgatgagggatggagatggaaaatcaaagtgctttgggttcgtcaattttgaa
aaggctgaagatgctgctagagctgttgaggctctgaatggaaagaaatttgatgataag
gagtggtatgttgggaaggcccagaagaaatctgaaagggaaaatgaattgaaacaacga
tttgaacagagtatgaaagaggctgcagacaagtatcaaggcgcgaacttgtatgttaaa
aatttggatgatactatagctgatgataaacttctggagttattctctccatttgggact
attacctcatgcaaggtcatgcgagaccctagtggagttagtaggggatcaggttttgtt
gcattctcgactcctgaagaggcaaatagagctctattggagatgaatggaaagatgatt
gtaagcaaacctctgtatgttgcacttgcacaacgaaaagaagatagaagagcaaggcta
caggctcagttttctcaaatgcggccagttgcaatggcacctccagttgcttctcgtatg
ccaatgtaccctcctggtggtccaggtcttggacaacaaatattctatggtcaaggccca
cctgccatcattccctcccagcctggatttgggtatcagcagcagcttgttcctggtatg
aggcctggtggggctccaatgccaaatttctttgtgccaatggttcagcaggggcagcaa
gggcagcgtcctggtggcagacgtggaggttctgtccagcaaaaccagcaaccagttccc
atgatgcaacagcagatgctaccaagggggcgtatctaccgctacccatcaggtcgcggt
atacctgatggtcccatgcctggtgttcctggaggcatgttttctgttccatatgacatc
agcggcggtggtggcatgcctatccgtgatgcagcactgtcgcagccaacaattccaata
ggggccttggctactgctcttgcaaatgccacaccagagcagcaaagaacgatgctgggt
gagaatctttacccgctcgtggaacagctggaacctgacaatgcagcaaaggttaccggc
atgcttctggagatggatcagactgaagttcttcatttgctcgagtcgcctgaagctttg
aaggcaaaggtagctgaggctatggatgttctgaggaacgttgctcagcaacagcaagct
ggcaatgcagctgatcaacttggctcattgtcactcaatgaaaaccttgtttcttga
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