Pyrus communis (pear): 137726433
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Entry
137726433 CDS
T10779
Name
(RefSeq) uncharacterized protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pcox Pyrus communis (pear)
Pathway
pcox03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137726433
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcox03019
]
137726433
03041 Spliceosome [BR:
pcox03041
]
137726433
Messenger RNA biogenesis [BR:
pcox03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
137726433
Spliceosome [BR:
pcox03041
]
Complex B
Other components
Prp19-related factors
137726433
Complex C
137726433
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
Mad3_BUB1_I
TPR_15
TPR_19
NRDE-2
HAT
Motif
Other DBs
NCBI-GeneID:
137726433
NCBI-ProteinID:
XP_068321463
LinkDB
All DBs
Position
2:2324061..2328956
Genome browser
AA seq
919 aa
AA seq
DB search
MAISQELYPSQDDLLYEEELLRNPFSLKLWWRYLIARAESPFKKRFIIYERALKALPGSY
KLWYAYLRERLELVRNLPITHSQYETLVNTFERALVTMHKMPRIWIMYLQTLTEQKLVTK
TRRTFDRALCALPVTQHDRIWEPYLVFVSQKGIPIETSLRVYRRYLKYDPTHIEDFIEFL
INSSLWQEAAERLAAVLNDDKFYSIKGKTKHRLWLELCDLLTKHATEVSGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRNLHEKARDIFEEGMITVVTVRDFSVIFDSYAHFEEIVL
AHKMETADLSDDEEDKENGVAEDGNEEEEDLRLDINLSVAELEKKMLDGFWLHDDKDIDL
RLARLDHLMDRRPVLANSVLLRQNPHNVEQWHRRVKLYEGNPTKQILTYTEAVRTIDPMK
AVGKPHTLWVAFAKLYENHNDIVNARVIFDKAVQVNYKTVDNLASLWCEWAEMELRHKNF
KGALELMRRATAEPSVEVKRRVAADGNAPVQMKLHKCLRIWAFYVDLEESLGKLESTRAV
YERILDLKIATPQIIINYASLLEEHKYFEDAFKVYQKGTKIFKYPHVKDIWVTYLSRFVK
RYGKKELERARELFEEAVQAAPADAKKPLYLQYAKLEEDYGLSKRAMKVYDEATKAVPNH
EKLGMYEIYIARATEIFGVPKTRDIYQQAIDSGLPDKDVKTMCLKFAELEKSLGEIDRAR
GVYTFASQFSDPRSDVDFWSKWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYM
MQKDQRLNMDEAKDKLKQAGVPEDEMAALERQLAPVANDTTTKDSRIGFVSAGAIQQTDG
GIKVTTNPEDIELPEENDSEDDERVEIQIAQKEVPDAVFGELANKRKEAEKDEGGDADTK
DDGSRLGALERIKRLKRGA
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atggcgatctctcaggagctatacccatcgcaagacgacctgctctacgaagaggagctt
ctccgcaacccattcagcctcaagctatggtggcgctacctaatcgctcgagccgaatct
ccgttcaagaagcgcttcataatctacgagcgggccctcaaagctctgcccggaagctac
aagctctggtacgcttacctccgcgaaagactcgagcttgtaaggaacttgcccatcact
cactcgcagtatgaaacactagtcaacacgtttgaacgagccctagtgacgatgcacaag
atgcccaggatttggattatgtacttgcagactttgacggagcagaaattggtcaccaag
actcgccggacctttgacagagcgctgtgtgctcttcccgtgacgcagcacgatcgcatt
tgggagccctacctcgtgttcgtgagccaaaagggcatcccaattgagacctcgcttcgg
gtttatcgcaggtatttgaaatatgaccctacccatattgaagatttcatcgagttcttg
attaattctagtctttggcaagaggctgccgagaggctggctgctgtgttgaatgatgat
aagttttactcgataaaggggaagacgaaacataggctgtggctagaattgtgtgatttg
cttactaagcatgccaccgaggtttcgggcctcaatgtggatgctataattagaggtggg
attaggaagtttacagatgaggtggggcggttgtggacctctcttgcggactattacatt
agaaggaatttgcatgagaaggcgagggatatatttgaggagggtatgataactgtcgta
acggtgagagattttagtgtgatttttgattcgtatgctcattttgaagagattgtactt
gcccataagatggaaactgctgatttgagtgatgatgaggaggacaaagagaatggggtt
gcggaggatggaaatgaggaggaagaagatcttcgattggatattaacttgtctgtggct
gagcttgagaagaaaatgcttgatgggttttggttacatgatgataaggatatagatttg
agattagctcgattggaccatctcatggatagaagacctgtactagcaaatagtgttctt
ttacgacaaaatcctcataatgtagagcagtggcaccgaagagtgaagctctatgagggt
aatcccaccaagcagatacttacttacactgaggcagtgaggacaattgatccaatgaaa
gcggttgggaagcctcacactttgtgggttgcttttgctaagttgtacgagaaccacaat
gatattgtcaatgccagagtgatttttgataaagcagtgcaggtgaattacaagaccgtg
gataatttggctagtctgtggtgtgagtgggcagaaatggaattgaggcataagaatttc
aaaggagcactggaactgatgaggcgggctactgcagagccatctgttgaggtgaaacga
agagtggctgctgatgggaatgcaccggttcagatgaagctgcataaatgcttgaggatt
tgggctttttatgtggacttggaggagagcctgggtaaattagagtccactcgagctgtt
tacgagaggatattggatttgaaaatagccacaccgcagatcataatcaattatgcatcg
cttcttgaggagcataaatactttgaagatgcgttcaaggtgtatcaaaaaggtactaaa
atattcaagtatccacatgtcaaagacatatgggttacatatctctctagatttgtaaag
agatatgggaagaaagaacttgagcgcgcaagagagctatttgaggaggctgttcaagcg
gcccctgctgatgcgaagaaacctttgtatcttcaatatgcaaagctggaggaggattat
ggcctatcaaagcgagcgatgaaagtctatgatgaagcaactaaggctgttccaaaccat
gagaaactgggcatgtatgaaatctatattgcccgtgccacagagatatttggcgtccca
aaaacaagggatatataccagcaggccatagattctggtcttccggacaaagatgtgaag
acaatgtgtttaaagtttgctgagcttgagaagagcttgggagaaattgatcgtgctcgg
ggagtgtatacatttgcgtcacagttttcagatccacgatctgatgtggatttctggagc
aaatggcatgagtttgaagtgcaacacggaaatgaagataccttccgggagatgcttcga
attaaacgaagtgtttctgcaagctatagccagacgcactttattctacccgagtacatg
atgcaaaaggatcagaggctgaacatggacgaggcaaaagacaagttgaaacaggcagga
gtccccgaagatgaaatggctgctctagagaggcagttggcacctgtggccaacgatact
accactaaagatagtagaataggctttgtgagtgctggagcaattcaacagactgacgga
gggatcaaagttaccacaaatcctgaagacattgagctaccagaagaaaatgattcagaa
gacgacgaaagggttgaaattcaaattgcacagaaggaggtcccggatgctgtttttgga
gagttggctaacaagagaaaggaggccgaaaaagatgagggcggagatgctgatactaag
gacgatggcagccgccttggtgcccttgagagaataaaaaggctaaaacgaggcgcctga
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