Pyrus communis (pear): 137727807
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Entry
137727807 CDS
T10779
Name
(RefSeq) protein PAT1 homolog isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
pcox Pyrus communis (pear)
Pathway
pcox03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137727807
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcox03019
]
137727807
Messenger RNA biogenesis [BR:
pcox03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
137727807
mRNA degradation factors
5'-3' decay
Decapping complex
137727807
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
137727807
NCBI-ProteinID:
XP_068322732
LinkDB
All DBs
Position
3:complement(21703001..21710048)
Genome browser
AA seq
823 aa
AA seq
DB search
MEGFESRDSNQEAASSIPQDLNHLQLNSSGEVFDASQYAFFGKDSVEEVELGGLDEEEEA
PVDEEEFLYNRQEGDISLSDIDDLSLTFEKLHKDVSGPRGAGVFGDRGSRESSSAAEWVQ
EHFPNWIDEEIVDAESTEDGKRWSSHPYSSARPAESMLPLYRTSSYPEPQQQQLQQQQQH
HQHFSSEPILVPKSAFTSYPPPGGRPQQASPNRQASHLNPYLSGGPQGGLSSPNLSPYSS
SQLQLNGLPHGPHFGGNLPQLNPGLSNSLPQKQWANQSGVYGDHPGLLNNLLQQQLAHQN
GLMPPQLMHQQQSQPQDPRLHHPVQPPFNHLPAMQSQLFNPHLSASPPLMSKFEAMLGMG
DLGDQRPKSAQKGRPNMRFSQHGFDTGSHRREGGWPQFRSKYMTAEEIENILRMQLAATH
SNDPYVDDYYHQFCLARKSAGAKLKHHFCPTQLRDLPPRARANTEPHAFLQVDALGRVPF
SSIRRPRPLLEVEPPNSSSPGNTEQKVSEKPLEQEPMLGARVAIEDGLCLLLDVDDIDRF
LQFSQLQDGGTQLRCRRQALLEGLAGSLQLVDPLGNNGPTVGLHKDDLVFLRLVSLPKGQ
KLLAKYLQLLFTGGELMRVVCMAIFRHLRFLFGSYPTDPGAAETTSVLARVVSSCARGMD
LGALSACLAAVVCSSEQPPLRPLGSPAGDGASLILNSVLERATELLTDPHAASNYNMTNR
QLWQASFDEFFGLLTKYCVNKYDTVMQSLLMQAPPNVAVIGSDAARAIGREMPVELLRAS
LPHTDEHQRQLLMDFTQRSMPIGASNSHDGGNGAHMNSESVLS
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atggaggggtttgagagtagggatagtaatcaagaggctgcctcttctatccctcaagat
ctcaaccatttgcagcttaattcctcaggagaggtgtttgacgcatcacagtatgcattt
tttggtaaagattctgttgaggaagttgagttgggaggtttagatgaagaagaggaggct
ccagtcgatgaggaggagtttctatataatagacaagagggtgacatatctctgtctgat
attgatgacctatcattaacctttgaaaagttacacaaggatgttagtggacctaggggt
gctggagtttttggtgatagaggatccagggaaagttcatctgctgctgagtgggtgcag
gagcatttccctaactggattgatgaagagatagttgatgctgaaagtaccgaggacggg
aaacgatggtcttcacacccatattcttcagctcgtcctgcagagtcgatgctgcctttg
tacagaacttcttcatatcctgagccccaacaacagcagctgcagcagcagcagcagcac
catcaacatttttccagtgaaccaattctggtgccgaaatcagctttcacttcttatccg
cctccaggtggcagacctcagcaggcttcgccgaaccgccaagcaagccacctgaaccca
tatctttctggtggaccccaggggggattatcttcaccaaacctatctccttactctagt
tctcaacttcaactgaatggattacctcatggaccacattttgggggaaatttgcctcag
cttaaccctggtctctctaatagcctaccccaaaagcaatgggccaatcaaagtggtgta
tatggagatcatcctggtcttctgaacaatttgttgcaacaacagctagctcatcagaat
ggtttaatgcctccacaattgatgcatcagcaacagtcacaaccacaggaccctagactg
catcatccagttcagccaccatttaatcatttgccggcaatgcagtctcaactatttaac
ccccatctctctgcatccccgcccttgatgagcaagtttgaagcaatgctcggtatgggt
gatcttggagatcaaaggccaaaatcagctcagaaaggtagaccaaatatgcgtttttct
caacatggatttgatacaggtagccacaggagagaaggtgggtggccgcaatttaggtcc
aagtatatgacagctgaagaaattgaaaatatactccgaatgcagctagccgcgacacac
agcaatgacccatatgtggatgattactaccaccagttttgccttgcaagaaaatctgct
ggggccaagttgaaacaccatttctgcccaactcaattaagggatcttcctcctcgagca
cgagctaatactgaaccacatgcttttctccaggttgatgctcttgggagggtccccttt
tcctcaatacgtaggcctcgccctcttcttgaagttgagcctccaaattcatctagccct
ggcaacactgaacaaaaggtttctgagaagccgctagaacaggagccaatgcttggtgct
agggttgcaattgaggatgggctttgtcttctcctggatgtggatgacattgatcgtttt
ctccaattcagtcaactccaagatggtggaacccagttgaggtgtaggcggcaggccttg
cttgaaggacttgcaggatctcttcaattggttgacccactcggcaacaatggccccaca
gttgggcttcataaggatgatcttgtatttctaaggttggtctcacttcccaagggccag
aagctcctggcaaagtacctgcagcttttatttacaggtggtgagctcatgcgagtagtc
tgtatggccatctttcgtcatttaaggttcttgtttggtagctaccctactgatccaggg
gctgcagaaactacaagtgttcttgcaagggttgtttcatcatgtgctcgaggtatggac
cttggtgcacttagtgcctgtcttgcagcagtggtttgttcctcagagcaaccccccctt
cgcccccttggaagccctgcaggagatggggcctctcttatcctcaattcagttcttgag
agggcaactgaactcttaactgatcctcatgctgcaagcaactacaatatgaccaatcgc
caactttggcaggcctcctttgatgaattctttggccttctgaccaagtattgtgtaaat
aaatatgatactgttatgcagtcactgctaatgcaggcccctccaaatgtggctgttatt
ggctcagatgctgccagagctattggtcgtgaaatgccagttgagctgttgcgtgctagc
cttcctcacactgatgagcatcagagacagctgttgatggacttcacgcagcggtctatg
cccataggagcatctaacagtcatgatgggggaaatggtgctcacatgaattcagagtct
gtgctgagctga
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