Pyrus communis (pear): 137729187
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Entry
137729187 CDS
T10779
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
pcox Pyrus communis (pear)
Pathway
pcox03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
137729187
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcox03021
]
137729187
03019 Messenger RNA biogenesis [BR:
pcox03019
]
137729187
Transcription machinery [BR:
pcox03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
137729187
Messenger RNA biogenesis [BR:
pcox03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
137729187
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
zf-CCCH_2
zf-CCCH_12
Torus
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
137729187
NCBI-ProteinID:
XP_068324143
LinkDB
All DBs
Position
3:25032145..25038472
Genome browser
AA seq
674 aa
AA seq
DB search
MEDSDGGLNFDFEGGLDAPATVSASAGPANTVPTSNYSVVQSDSAVTGPGANQAAAAPQP
NQNANRTGGRSYRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECREQDCV
YKHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQHLTSYNYNNSNKF
YQQRNAGFPPQGDKYQPAQGPNNFVGKPTTAESGNVQQQQQQPQQLQQTQQHVGPAVAQT
QNLPNGLANQANRSALPLPQGTSRYFIVKSCNRENLELSVQQGLWATQRSNESKLNEAFD
SAENVILIFSVNRTRHFQGCAKMMSRIGGSVGGGNWKYAHGTAHYGRNFSVKWLKLCELS
FHKTRHLRNPYNENLPVKISRDCQELELSVGEQLASLLYLEPDSELMEISIAAESKREEE
KAKGVNPENGGENPDIVPFEDNEEEEEEESEDEEDSFGQVPGAGNDGRGRGRGGVMWPPH
MALPRGGRPMPGMQGFPPGMMGPDAMPYGPDGFVMPNPFGMGPRGFNPYGPRFSGDFTGP
NPGMMFRGRPQQPGFPPGGFGIMGPGRAPFMGGIHPGRGGRPAGMSPMFPPPPPPSSQNP
NRMPKRDPRGASTDRKGQDMSGPAGGPDDETQYGAGNNSRHDDSESEDEAPRRSRHGDGR
KKRRDSEGDATSEH
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggaggactcagacggaggcctcaacttcgacttcgagggaggcctcgatgcacccgcc
accgtctcggcctccgcgggccccgccaatacggtcccaacttcgaattattccgtggtg
caatccgactcggccgttaccgggccgggtgccaatcaggccgctgcggcgccgcagccc
aatcagaatgcgaaccggacaggtgggcggagctaccgccaaacggtgtgtcgtcactgg
ctgcgcagcctttgtatgaagggcgatgcctgtgggttcctccaccaatacgacaagtcg
cgcatgcccgtgtgccgcttcttccggttgtacggcgagtgccgcgagcaggactgcgtg
tacaagcacactaacgaggacatcaaagagtgtaatatgtacaagttgggtttttgtcca
aatggtcctgattgccggtatagacacgcaaagctgcctggacctccacctccagtggaa
gaagtccttcagaagatccagcatttgacttcttacaattacaacaactcaaataagttc
tatcaacaaaggaatgctggttttcccccacaaggagataagtatcagcctgcacaagga
cccaacaattttgtgggaaaacctactacagcagagtctgggaatgtccagcagcagcaa
cagcaaccgcaacagcttcaacaaacccaacaacatgttggccccgcagtcgcacagaca
caaaatcttcccaatggcttagctaatcaggcaaatagaagcgcgttgcctttgcctcaa
ggaacatctaggtattttattgttaaaagttgcaaccgagaaaatttggaattatctgta
caacaaggattatgggcaactcagaggagcaacgagtccaaacttaatgaagcttttgac
tctgctgaaaatgtgattttaattttctcagtcaaccggactcgacatttccagggttgt
gcaaagatgatgtccagaattggtgggtctgttggtggagggaattggaaatatgcacac
ggaaccgcgcattatgggcgaaatttctctgtcaaatggttaaagctatgtgaactgtcc
tttcacaaaactcgtcatttgaggaacccctacaatgagaacctaccagtgaagataagt
agagattgtcaagagctagagctctccgttggtgagcagttggcgtccttgctttatctt
gagccagatagtgaacttatggaaatttcgattgcggcagaatcaaaacgcgaagaagaa
aaagcaaagggagtcaatccagagaatggtggtgagaatccagacattgtcccatttgag
gacaatgaagaggaggaagaagaagaaagtgaagatgaggaagatagcttcggtcaagtt
cctggagcaggaaatgatggcagaggaaggggcagaggaggagtcatgtggcctcctcac
atggctctaccaaggggtggcagacctatgcccgggatgcagggttttcccccaggaatg
atgggtcctgatgcaatgccctatggacctgacggatttgtaatgccaaatccgtttggt
atggggcctcggggtttcaatccgtatggtcccaggttttcaggtgattttacagggccc
aaccctggcatgatgtttcgtgggagaccacaacaacctggatttccacctggtgggttt
gggatcatgggtcctggacgtgcaccatttatgggagggatacatccaggccgaggtggt
cggccagcaggtatgtctccaatgtttccaccacccccaccaccatcatctcaaaaccct
aaccggatgccgaagagagatccaaggggagcttccactgatcggaagggacaagatatg
tcaggtccggctggtggaccagatgatgagacacagtatggcgctggaaacaactctaga
catgatgatagcgaaagtgaggatgaggccccgaggcggtcgaggcatggagatggaagg
aagaaacggcgagactcggaaggagatgcgacctccgagcactag
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