Pyrus communis (pear): 137729195
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Entry
137729195 CDS
T10779
Name
(RefSeq) polyadenylate-binding protein 8-like
KO
K13126
polyadenylate-binding protein
Organism
pcox Pyrus communis (pear)
Pathway
pcox03015
mRNA surveillance pathway
pcox03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
137729195
09123 Folding, sorting and degradation
03018 RNA degradation
137729195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcox03019
]
137729195
03041 Spliceosome [BR:
pcox03041
]
137729195
Messenger RNA biogenesis [BR:
pcox03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
137729195
mRNA cycle factors
Stress granule specific factors
137729195
Spliceosome [BR:
pcox03041
]
Complex C
Other components
Complex C specific factors
137729195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_3
RRM_7
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
137729195
NCBI-ProteinID:
XP_068324152
LinkDB
All DBs
Position
3:complement(9819678..9825833)
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AA seq
655 aa
AA seq
DB search
MAQVQQVSAQNANAAAAAAVANGAGGANQFVTTSLYVGDLDPNVTDSQLYDLFNQLGQVV
SVRVCRDLSTRRSLGYGYVNFANPQDAARALDMLNFTPVNGRPIRIMYSHRDPTIRKSGA
GNIFIKNLDKAIDHKALHDTFSAFGDILSCKVATDPAGQSKGYGFVQFDKEEAAQKAIEK
LNGMLLNDKQVYVGPFLRKQERDSTADKSRFNNVYVKNLSESTTEEDLKKVFSEFGITTS
EVVMRDGDGKSKCFGFVNFEKADDAARAVEALNGKKFDDKEWYVGKAQKKSERENELKQR
FEQSMKEAADKYQGANLYVKNLDDTIADDKLHELFSPFGTITSCKVMRDPSGISRGSGFV
AFSTPEEANRALLEMNGKMIVSKPLYVALAQRKEDRRARLLAQFSQMRPVAMAPSRMPMY
HPGGPGLGQQIFYGQGPPAIIPSQPGFGYQQQLVPGMRPGGAPMPNFFVPMVQQGQQGQR
PGGRRVGSVQQNQQPVPIMQQQMLPRGRVYRYPSGRGIPDGPMPGVAGGMFSVPYDIGGG
GGMPIRDAALSQPTIPIGALATALANATPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLL
EMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQQVGNAADQLGSLSLNGNLVS
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaagttcagcaggtttcggctcagaatgcgaacgcggcagcagcggcagctgtg
gcgaacggtgccggaggagctaaccagttcgtgacgacgtcgctttacgttggcgatctt
gacccgaacgtcaccgattcgcagctctacgacctgttcaaccagctgggtcaggtagtt
tcagttagggtttgcagggacttgtccactcggaggtcgcttggctatggctatgtcaat
tttgccaacccgcaagatgctgctagggctttggatatgttgaactttactcctgtgaat
ggaaggcccattaggattatgtactctcatcgtgatcctactattcgcaaaagtggggct
ggaaacatatttattaagaatttggacaaagctattgatcacaaagccttgcatgataca
ttttctgcatttggagacatcctttcttgtaaggtggctactgatcctgctggccagtca
aaaggctatggctttgtacaatttgacaaagaagaagctgcccaaaaggctatagagaag
ttgaatggtatgcttttaaatgataagcaagtttatgttggtcctttcctccggaaacag
gaaagagacagtactgctgacaagtcaagattcaacaatgtttatgtaaagaatctgtca
gagtcaactaccgaggaagatttgaaaaaagttttttctgaatttgggataaccactagt
gaagtggtgatgagggatggagatggaaaatcaaagtgctttgggtttgtcaattttgaa
aaggctgatgatgctgctagagctgttgaggctttgaatggaaagaaatttgatgataag
gagtggtatgttgggaaggcccagaagaaatctgaaagggaaaatgagttgaaacaacga
tttgaacagagtatgaaagaggcagcagacaagtatcaaggtgcgaacttgtatgttaaa
aatttggatgataccattgctgatgataaacttcacgagcttttctctccatttgggact
attacctcatgcaaggtcatgcgagatcctagtggaataagtaggggatcaggttttgtt
gcattctcaactcctgaagaggcaaatagagctctattggagatgaatggaaagatgatt
gtaagtaaacctctctatgttgcacttgcacaacgaaaagaagatagaagagcaaggcta
ctggctcagttttctcaaatgcggcctgttgcaatggcaccttctcgtatgccaatgtac
catcctggtggtccaggtcttggacaacaaatattctacggtcaaggcccacctgctatc
attccctcacagcctggattcgggtatcagcagcagcttgttcctggtatgaggcctggt
ggggcaccaatgccaaatttctttgtgccaatggttcagcaggggcagcaagggcagcgt
cctggtggcagacgtgtgggctctgtccagcaaaaccaacaaccagttccgataatgcaa
cagcagatgctaccaaggggacgtgtctaccgctacccatctggtcgcggaatacctgat
ggtcctatgcctggtgttgctggaggcatgttttctgtaccatatgacataggcggcggt
ggcggcatgcctatccgtgatgcagcactgtcccagccaacaattccaataggggctttg
gctactgctcttgcaaatgctacaccagagcagcaaagaacgatgctgggtgagaatctt
tacccgctcgtggaacagctggaacctgacaatgcagcgaaggttacaggcatgcttctg
gagatggatcagactgaggttcttcatttgctcgagtcgcctgaagctttgaaggcaaag
gtagctgaggctatggatgttctgaggaacgttgctcagcaacagcaagttggcaatgca
gctgatcaacttggctcattgtcactcaatgggaaccttgtttcatga
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