Pyrus communis (pear): 137729454
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Entry
137729454 CDS
T10779
Name
(RefSeq) sm-like protein LSM5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
pcox Pyrus communis (pear)
Pathway
pcox03018
RNA degradation
pcox03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137729454
09123 Folding, sorting and degradation
03018 RNA degradation
137729454
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcox03019
]
137729454
03041 Spliceosome [BR:
pcox03041
]
137729454
Messenger RNA biogenesis [BR:
pcox03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
137729454
mRNA degradation factors
5'-3' decay
Lsm complex
137729454
Spliceosome [BR:
pcox03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
137729454
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF7452
Motif
Other DBs
NCBI-GeneID:
137729454
NCBI-ProteinID:
XP_068324511
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All DBs
Position
3:18935951..18938172
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AA seq
88 aa
AA seq
DB search
MAASNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITPEG
RRITKLDQILLNGNNIAILVPGGSPEVE
NT seq
267 nt
NT seq
+upstream
nt +downstream
nt
atggccgccagcaatccgtcgcagctgctcccatcagagttgatcgaccggtgcataggg
tcgaagatatgggtgataatgaagggagacaaggagctcgtagggactctgaggggtttc
gatgtctacgtcaacatggtactggaagacgtcactgaatatgagattactcccgaagga
agacgtataaccaagcttgatcagattttactcaatggaaacaatattgccattctggtc
cctggcggctcacctgaagtggaatga
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