Pyrus communis (pear): 137730354
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Entry
137730354 CDS
T10779
Name
(RefSeq) LOW QUALITY PROTEIN: protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
pcox Pyrus communis (pear)
Pathway
pcox03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
137730354
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcox03019
]
137730354
04121 Ubiquitin system [BR:
pcox04121
]
137730354
03036 Chromosome and associated proteins [BR:
pcox03036
]
137730354
03400 DNA repair and recombination proteins [BR:
pcox03400
]
137730354
Messenger RNA biogenesis [BR:
pcox03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
137730354
Ubiquitin system [BR:
pcox04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
137730354
Chromosome and associated proteins [BR:
pcox03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
137730354
DNA repair and recombination proteins [BR:
pcox03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
137730354
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT_2
BRCT
zf-HC5HC2H
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-C3HC4_3
zf-RING_UBOX
zf-C3HC4_4
zf-HC5HC2H_2
zf-RING_6
zf-RING_5
zf-RING_10
RTT107_BRCT_5
zf-rbx1
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
137730354
NCBI-ProteinID:
XP_068325518
LinkDB
All DBs
Position
3:complement(25228061..25233552)
Genome browser
AA seq
1030 aa
AA seq
DB search
METPPPHLEKMGRELKCPICLSLLSSAVSLNCNHLFCNSCIVKSMKSGSNCPVCKIPYRR
REVRPAPHMDNLVSIYKSMEDDLGINIFVTQNAPRTKSSGGKHHAEDDFSHGEQDLPEFQ
DRAQKQKTLRGKRSRKAKANLETSGSISIKPSFPNKKRVQVPQSPLSETPTCHEKLEGDL
MADRAKQSSKTLKEKPVLNEKGELVLSPFFWLNDKDVENLSQHSSGDQLSDLPSPNVPTF
SDIKDSDDENSVRSPPVSVXPGEVHDTSSNAADLYDSEMFEWTQRACSPELFPSPSEMQL
ADDELDRVQEKEPKEVSQNKKSDELSAKSARSKRNKKSSGNMDFMPELPTAGTKDVSHEV
VSNKSDKRGRKARNLTKRKCATSHTDPGTDINVTSKGSKVFYEEQACENNGGSLAKTHKR
SKKEHSSVVTKPTSENVHVLSTRADSRINGDENRVTESPTSIGKNAGSDEPSSKKAGNIY
EEVSDKNKIDRPVRSKIQKMVSMKKTMLEDVSEIHKQANKVTPTELSPTNLPTDDNQKAS
ESRNKSRKLARKAKSGDQELKSKKKLKASSDGNSKDDTSVEIGEGHGDVNENGNETTEKS
KDNRDVLTDQSPVQKLLSFTNVVLKRCEAVPSKIQCAFCLSSEESEASGEIVHYCNGKPV
AADHDGGLKVIHVHRTCAEWAPNIYFEDDMAINLEAELTRSRKIKCSCCAIKGAALGCCK
KSCRRSFHVTCAKLMPQCRWDTDNFVMLCPIHASSKLPNESPGSQARRKKSNPRKQPNIE
CPKVVAKQDSNIPPDQKFCGSSKKLILCCSSLTNAERESVSGFESLSGLTVLKNWDSSVT
HIIASTDENGACRRTLKVLMGILEGKWVLSVEWINACTEAMKLVDEEPYEINVDIYGIRD
GPRLGRLRLKDKQPKLFEGFKFYFMGNFRPSYKGYLQDLVIAAGGTILQRKPVPEGPRAL
SVGSPKCQTFIIYSLELPDQYHCSKKSTIFNTRQADAKALATSAGAKVASNTWVLNSIAA
CKLQNLSDSK
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atggagactcctccgccccacctcgagaagatgggcagagaactcaagtgccccatttgt
ttgagtctactgagttctgcggtttcactcaattgcaatcatctcttctgcaactcttgt
attgtgaagtcgatgaaatcgggttccaattgtcctgtttgtaaaatcccctatcggcgt
agagaggttcgcccggctcctcacatggataatttggttagtatttacaagagcatggaa
gatgatttgggaattaatatatttgtcactcagaatgcaccccgaactaaatcatcaggt
ggaaaacatcatgctgaagatgactttagccacggcgagcaagatcttcctgagtttcag
gacagagctcagaaacagaaaaccttaagaggaaaaagatccaggaaagctaaggccaac
ctggaaacttctggttctatttcaattaaaccttcatttccaaacaagaaaagggtccag
gttccacagtctcctctttcagaaaccccaacctgccatgaaaagttagaaggtgattta
atggctgatcgagcgaagcagagttcaaaaacactgaaggagaagcctgttctaaatgag
aagggagaactggttctttcacctttcttttggttgaatgacaaagatgtagaaaatttg
agtcagcattcttccggtgatcaacttagtgatcttccatctccaaatgttcccacattc
agtgatatcaaagactctgatgatgaaaattctgttaggtccccaccggtaagtgtataa
cctggagaagtgcacgacacatcttctaatgctgcagatctatatgatagtgaaatgttt
gaatggacacaaagagcttgctctcctgaactcttcccaagtccttctgagatgcagctt
gcagatgatgaactcgatagagttcaagagaaggaaccaaaagaagtctcacaaaacaag
aaatcagatgaactttctgctaaaagtgcaaggtctaaaagaaacaaaaaaagtagtgga
aatatggattttatgccagagcttcccactgctggaactaaagatgttagtcacgaagtt
gttagtaataaatccgacaagcgaggtaggaaggcaaggaatctcacgaaaagaaaatgt
gctacaagccatacagatccaggaacagatattaatgtcacttcaaagggatctaaggta
ttttatgaagaacaagcatgtgagaataatggtggttctttagctaagactcacaaaagg
agtaagaaggaacattcatctgttgtaaccaagcccacatctgaaaatgttcatgtcctc
tctaccagagctgatagtcgaattaatggtgatgaaaatagggtaactgaatcacctact
tcaataggaaaaaatgctggcagtgatgaaccatccagtaagaaggctggaaatatctat
gaggaggtcagtgacaagaacaagattgaccggccagtaaggtcaaaaatacaaaagatg
gtctccatgaaaaagacaatgcttgaggatgtatcagaaatacacaagcaagcaaataag
gttactcctactgagttgtctcctacaaatcttcccacagatgataaccagaaagcctct
gaatccagaaataaatccagaaaacttgctagaaaagccaagtcaggtgatcaagaactg
aaaagtaagaaaaagctgaaagcttcttctgatggcaactcaaaggatgatacttctgtt
gagattggagaaggtcatggggatgttaacgaaaatggaaatgaaaccactgagaagagc
aaggacaatcgtgatgttttaactgatcaatcaccagtgcagaagcttctttcatttacc
aatgtggttttgaagagatgtgaggctgttcctagtaaaatccagtgtgctttctgtctt
tcatcagaagaatcagaggcttctggagagatagtccactattgtaatggcaagcctgtt
gctgcggatcacgatggaggactcaaggttatacatgtacacaggacctgcgccgaatgg
gctcctaatatctattttgaagatgatatggctattaatcttgaagctgaattaactagg
agtcgtaaaattaaatgttcttgctgcgcaatcaaaggagctgctcttgggtgctgcaag
aagagttgtcgtaggagctttcatgttacctgtgcaaagctgatgcctcaatgtcgctgg
gatactgataactttgttatgttatgccccattcatgcctcctccaagttgccaaatgaa
agccctggatctcaagcaaggaggaaaaagagcaatcctagaaaacaacctaatattgaa
tgtcctaaagttgttgctaaacaagacagcaatatccccccagatcagaagttttgtgga
tcatccaagaaattgattctttgttgttcatctctcacaaatgcagagagggagtctgtc
tctggatttgaaagtttatctggacttacggttttgaagaattgggattctagtgttaca
catattattgcatcgacagatgaaaatggagcatgcagaagaaccctcaaggttttgatg
ggtatcttggaggggaagtgggttctgagtgtggagtggattaatgcttgcacagaagca
atgaaactagttgatgaggagccttatgaaatcaacgttgacatttatggaatcagggat
ggtcctcgacttggtagactaaggctgaaggacaagcaaccaaagctttttgaggggttc
aagttttacttcatgggaaacttcagaccttcatacaaggggtatttacaagaccttgta
atagctgctggaggaacgattttgcaaagaaaacctgttccagagggcccaagagccttg
tcagtcggttcccccaaatgtcaaaccttcataatttacagcctcgagctacctgaccaa
tatcattgcagcaagaagagtacaattttcaacactaggcaggctgatgcaaaggctttg
gccacctccgctggagccaaggtagcaagcaacacatgggtattgaactccattgctgcc
tgcaagttacaaaatctctctgattccaaatag
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