Pyrus communis (pear): 137730780
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Entry
137730780 CDS
T10779
Name
(RefSeq) THO complex subunit 5B-like
KO
K13174
THO complex subunit 5
Organism
pcox Pyrus communis (pear)
Pathway
pcox03013
Nucleocytoplasmic transport
pcox03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137730780
09122 Translation
03013 Nucleocytoplasmic transport
137730780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcox03019
]
137730780
03041 Spliceosome [BR:
pcox03041
]
137730780
Messenger RNA biogenesis [BR:
pcox03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
137730780
Spliceosome [BR:
pcox03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
137730780
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FmiP_Thoc5
RWD
Motif
Other DBs
NCBI-GeneID:
137730780
NCBI-ProteinID:
XP_068325844
LinkDB
All DBs
Position
1:4857992..4861829
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AA seq
813 aa
AA seq
DB search
MEDDEIEEGMLVEEDAAPPPPKKPGKSPYEMLQESKFSVEDIVTKMLTIKKEAKPKSELR
ELVTQMFLNFVTLRQANRSILLEEDRVKAETESAKAPVDLTTLQLHNLMYEKSHYVKAIK
ACKDFKSKYPDIELVPEEEFFRDAPADIKEPTLSNDAGHDIMLKRLNFELHQRKELCKHH
EKLEIHKKGLLETIANRKKFLSSLPSHLKSLKKASLPVQNQLGLQHTKKLKQHHAAELLP
PPLYVVYSQFMAQKEAFDEQIELDIVGSVKDAQAFAHKQANKETGISTNVETSREDDALD
EEDDGQRRRKRPKRAPVKQNLEQSGLYQVHPLKIILHIYDDEVSDPKSAKLITLKFEFLL
KLNVVCVGIEGSNDAAENNTLCNLFPDDTGLELPHQSAKLVVGDTLAFDEKRTSRPYKWA
QHLSGIDFLPEVAPLLAAPETPSGDTAKSDAVISGLSLYRQQNRIQTVVRRIRSRRKAQM
ALVEQIESLMKLKWPSVSCESVPWALHTPLCKLHGFSPVGPPPNVASSLSVLDKEQGQEP
MDVDLVGRSGSSKEELESVREDGELPSLVPAASIANVSKLAHHKGASLDHSRRPSLLSKT
PPISKAKSLSYKKLDEDLDLLLDTESDQDEPARVLEEENLASVECFEMAGTSWVDFGVRE
YCLVLTRRVDRDKRNMKLEAKIKISMEYPLRPPYFALSLSTISGENSKESDDSECFNELR
AMEAEVNLHMVKMLPQSEENNILAHQVCCVAMLFDYYMDEASPSSEKRRSTSVVDVGLCK
PVSGQIVARSFRGRDRRKMISWKDMECTSGYPY
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atggaagacgacgagatagaggaggggatgctggtggaggaagacgccgctccgccgccg
ccgaagaagccgggaaaatccccgtacgaaatgcttcaggagagcaagttctcagtggag
gacatagtgacgaagatgctcaccatcaaaaaagaagcgaaacctaaatcggagctccgc
gagcttgtcactcagatgttcctcaacttcgtcaccctccgccaggcgaatcgttcgatc
ttgctcgaggaggaccgcgtgaaagcggagacggagagtgcgaaggcgccggtggacttg
acgacgctgcagctccacaatctgatgtacgagaagagccactacgtgaaggccattaaa
gcttgcaaggacttcaagtctaagtacccggacattgagctggtcccggaagaagagttc
tttcgcgacgccccggccgatatcaaggagccgacgctgtcgaatgatgcagggcacgac
attatgctcaagaggctcaatttcgagctccaccagcgcaaggagctctgcaagcatcat
gagaagcttgagattcataagaagggtctgttggagacgattgccaatcggaagaagttc
ttgtccagtcttccttcgcacttaaagtccctaaagaaggcttctttgccggtgcagaac
caattggggcttcagcataccaagaagctcaagcagcatcacgctgcagagttgcttccg
ccgcctctgtatgtagtttactcgcagttcatggcgcagaaggaggcatttgatgaacag
attgagttggatatagtggggagtgtgaaggacgctcaagcttttgcccataagcaagca
aataaggagactggcatttctaccaatgtagagactagtagggaggatgatgcactggat
gaggaagatgatgggcagagaaggagaaagcggccaaagagggctccagtcaagcaaaac
cttgaacagtctggactgtatcaagttcatccgctgaaaatcatccttcatatttatgat
gatgaggtttctgatcccaagtctgcaaaacttatcaccctcaagtttgagtttttgttg
aagttgaatgtggtatgtgttggaattgaaggatccaatgatgcagcggaaaataacacc
ttatgcaacctattcccagatgacactggccttgagcttccccatcagtcagccaagctc
gttgtgggtgatactcttgcatttgatgaaaagagaacttcccgtccgtataagtgggcc
cagcatttatcgggaattgatttcttgcctgaggtggcacctttgcttgctgcccctgaa
actccaagtggtgatacagctaaaagtgatgctgttatatctggtctgtcactttaccgc
cagcagaaccgaatacagacagttgtgcgaagaattcgctctcggagaaaagctcagatg
gctcttgtggaacagattgaatcacttatgaagcttaaatggccgtctgtgtcttgtgaa
agtgttccatgggctttgcatacccctttgtgcaaattgcatggtttttcacctgttggg
cctccacctaatgtggcatcatctttgtctgtcctagataaggagcagggtcaggagcct
atggatgtcgatttggttggacgatctggttcttcgaaggaagagctggagagtgtcaga
gaagatggggaacttccatctttagttccagctgcatccattgccaatgttagtaaactt
gctcaccataaaggagctagtcttgaccactccagacggccgtccttactttcaaaaaca
cctccaatcagcaaggccaaatcgctaagttataagaaactggatgaagatttagatctt
cttctggatacagagagtgatcaggacgaacctgcacgtgtgctagaggaagaaaattta
gcgtctgttgaatgctttgagatggctggaacgtcatgggtggattttggggtcagagaa
tattgtcttgttttaaccaggagagttgacagggataagaggaatatgaagttagaagcc
aagattaagatcagcatggagtatccattaaggcctccctattttgcactcagtcttagc
actatatctggagaaaactctaaagagagcgatgactctgagtgcttcaatgaacttcgt
gcaatggaagcagaggtcaatctgcacatggtgaagatgttacctcaaagtgaagaaaat
aatatcttagctcatcaggtttgttgtgtagcaatgttattcgactattacatggacgaa
gcatccccatcttctgaaaagagacggagcacttctgttgttgatgttggcttgtgcaag
cccgtcagtggtcagattgttgccagatcattcagaggaagggatcgcaggaagatgata
tcctggaaggacatggaatgcacttcaggctatccttactag
DBGET
integrated database retrieval system