Pyrus communis (pear): 137730814
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Entry
137730814 CDS
T10779
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pcox Pyrus communis (pear)
Pathway
pcox03013
Nucleocytoplasmic transport
pcox03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
137730814
03015 mRNA surveillance pathway
137730814
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcox03019
]
137730814
Enzymes [BR:
pcox01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
137730814
5.6.2.5 RNA 5'-3' helicase
137730814
Messenger RNA biogenesis [BR:
pcox03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
137730814
mRNA cycle factors
Common to processing body (P body) and stress granule
137730814
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
NAT10_TcmA_helicase
NPHP3_N
nSTAND3
ATPase
PhoH
SRP54
AAA_16
AAA_22
Ribosomal_S13_N
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
137730814
NCBI-ProteinID:
XP_068325894
LinkDB
All DBs
Position
4:25848205..25861517
Genome browser
AA seq
1267 aa
AA seq
DB search
MDLQPNNLFDTASQPDTANDAYTFLEFNTQGEDFDYPEFRDPIRSPVAWPTASDSLSEPA
DRDRGGGGVGSDQQSDASPVSAAPGSATKARAGGSGSNAGNNQVVDVLTAGMSVLNFEDT
GDDDNYEFGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRA
KHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMN
WDLSQWCPLIDDRCFLQWLVKVPSEQEQLRARQISAQQINKVEELWKSNPDASLEDLEKP
GVDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRIA
YFVFTKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVD
LNHGFSVDFVWKSTSFDRMQGAMKAFAVDETSVSGYIYHHLLGHEVEVQMVRNSLPRRFG
APGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSN
VAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDMSEKSELHKLQQLKD
EQGELSSNDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQAT
EPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLARSLFERLVILGVKPIRLQVQY
RMHPALSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGT
SYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIE
VASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQ
PLWNSLLTHYKEHECLVEGPLNNLKQSMVQFPKPKKIYNDRRLFYGGGPGVIPNDSFGSV
ASAGQSADRRSNRGRAGSYLPPGPPNGTHKPGVHPAGYPLPQAPLSPFHGGPLSQPYAIP
TRGAVHGPVGAVPHVPQPGSRGFGAGRGNAGAPIGGHLPHQQGTQQNVGNMGSTFNIPSL
KNPNSQPSVGGPLSQHGFVNNMPVQGPSQTFRDGFSMAGMSQECLGDDFKSQGSHVPYNV
ADFSTQASQSGYAVDYVTQGAQGGFPGNFLNQNSQAGYSRFGSGNDFMSQDYMPHGSQGL
FTQVGFNDPSQDGVANANQLQSQGFMNSLYSQPFAHYNTQPMNLQAPQQQQQQQGQTSQN
QKIHYNG
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atggatttacagcccaacaacctctttgacacggcgtcgcagcccgacaccgccaatgac
gcctacaccttcctcgaattcaacacccaaggcgaggactttgactacccggagttccgc
gacccgattcggtcccctgtcgcctggcccaccgcttcagattccttatcggaacccgcg
gaccgtgaccgtggcgggggtggagtcggatcggatcagcagtctgatgcatcaccggtt
tcagctgccccgggcagcgccacaaaggctagggcaggtgggtcgggcagtaacgctggg
aataatcaggtggttgacgtcctaactgctgggatgagtgtgcttaactttgaggacact
ggggatgacgacaattacgagtttggaaaaggggatttcacggaacatgcgtgccggtac
tgcggcgtgtcgaacccggcgtgcgttgtgaggtgtaatgtgccttcgtgtcgaaaatgg
ttctgtaattctagggggaatacgtccggctcccatattgtgaatcacctggtccgagcc
aaacacaaggaagtctgtcttcataaagatagcccattgggagaaacaatccttgaatgc
tacaactgtggatgtcgtaatgtattccttctgggatttatttcagccaagacagagagt
gttgttgttcttctttgtagggaaccctgcttaagtgttaatgcattgaaggatatgaac
tgggatctgagccagtggtgtcccctgatagatgataggtgtttcttgcagtggcttgtt
aaggtcccgtctgaacaggagcagctaagggcgcgccaaatcagtgctcaacaaataaat
aaagtagaagaactttggaagagcaatcctgatgcttcccttgaagatctcgagaagccg
ggtgtggacgatgaaccccaacccgtggccttgaagtatgaagatgcttaccagtatcaa
aatgtgtttgcaccacttattaaacttgaagctgactatgataaaatgatgaaagaatct
caaagcaaagacaatgtcacaattcggtgggatattggtcttaacaagaagcgtattgct
tattttgtgtttacaaaggaagacaatgagttgcgccttgtacctggtgatgagttgcgg
cttcgttattctggagatgcagctcatccagcatggcagtcagtgggacacgttatcaag
ttaaccgcacaagaagaggttgcacttgaacttcgtgccagtcagggagttccagtggat
ctgaaccatggcttcagtgttgactttgtctggaagagtacaagttttgatcggatgcag
ggagctatgaaagcttttgcagtcgatgagacaagtgttagtggatatatttatcatcat
ttgttaggccatgaagtagaggttcaaatggtccgtaattcattgcctcgtcgttttggt
gcacctggtcttccggagctcaatgcatctcaagtttttgctgtaaagagtgtccttcag
aagcctataagtttgatccagggtccacctggcacaggaaaaactgtgacttctgcagca
attgtgtatcacatggctaaacaaggccagggacaggttttggtgtgtgctcctagtaat
gtggctgtagaccaactagctgagaagataagtgcaactgggttgaaggttgttagactt
tgtgcaaaatcaagggaagctgtaagttctcctgttgagcatttaacccttcattaccag
gttcgtcatcttgacatgtcagaaaagagtgaacttcacaagctgcaacaattgaaggat
gagcaaggagaattgtctagtaatgatgagaaaaaatataaggcactgaagcgggcaacc
gagagggagatttctcaaagtgctgatgtcatttgttgcacatgtgttggtgctggagat
cctcgattggccaattttaggttccggcaggtacttattgatgagtcgactcaggctaca
gaacctgaatgcctgattcctttggttcttggggcaaagcaggttgttcttgttggagat
cactgccagcttggtccagtcattatgtgcaagaaagcagctcgtgctgggcttgcccgg
tctctttttgaacgcctcgttatacttggtgtgaaaccaattagattgcaggttcaatac
cgaatgcatccagccttgtcagaatttccatctaacagcttctacgagggcacacttcaa
aatggagttaccatcaatgaaaggcaatcatcgggcattgattttccttggccggttccc
aatcgtcccatgttcttttatgtacagatggggcaagaggagataagtgctagtggaaca
tcctatctgaacagaactgaggctgctaacgttgaaaagattgtcacaacattcttgagg
agtggcgtagtccctagtcagattggagtgatcacaccatatgagggacagagagcttat
attgtgaactatatgtcgagaaatggtgctctcagacagcaactttataaggaaattgag
gttgccagcgtagattcatttcaaggacgggaaaaggattatatcatcctttcgtgtgtg
aggagtaatgagcatcagggcatcggattccttaatgatcctcgcaggctcaatgttgct
ctaacacgcgctcgatatggtattgtcattcttggaaaccctaaagttcttagtaaacag
ccactgtggaatagcctgttgactcattacaaggaacacgagtgcttggttgaggggcca
ctaaataacctgaagcagagtatggtgcaatttccaaagcctaaaaagatctacaatgat
cgtcgcctattctatggtggtggtcctggagttatccccaatgacagttttgggtctgtt
gcctcagctggccaaagtgctgacagaagaagtaatcggggtagggcaggttcttaccta
cctcctggcccacccaatggtacccataagcctggtgtacatccggctggatatccatta
cctcaggcacctctttcgccatttcatggaggacccctttctcaaccgtatgctattcca
actcgtggagctgtgcatggaccagttggagctgttcctcatgtccctcaacctggaagt
cgtggttttggggcaggacgtgggaatgccggtgctccaattggcggtcatcttccgcac
cagcaaggcacacaacaaaatgttgggaatatggggtctaccttcaacattccttctctt
aaaaatccaaatagccaaccatctgttggtggccccttatctcaacatggatttgtcaat
aatatgccagttcaagggccaagccaaacgtttcgtgatggattttccatggcgggcatg
tctcaggaatgtttgggtgatgactttaaaagtcagggatcacatgttccttataatgtt
gctgacttctccactcaggcttctcaaagtggatatgctgttgattatgttactcaagga
gcacaaggtgggtttccagggaactttctgaaccagaactctcaagctggatattctcga
tttggtagtgggaatgacttcatgtctcaggactacatgcctcatggatcacaaggccta
tttactcaggtgggctttaatgacccatcacaggatggagttgcaaatgccaatcaactt
cagtctcagggctttatgaactcactgtactctcagccttttgcccattacaacacacag
ccaatgaacttgcaggccccacaacaacaacaacagcagcagggtcagacctcccaaaat
cagaaaatccactacaatggttaa
DBGET
integrated database retrieval system
