Pyrus communis (pear): 137730814
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Entry
137730814 CDS
T10779
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pcox Pyrus communis (pear)
Pathway
pcox03013
Nucleocytoplasmic transport
pcox03015
mRNA surveillance pathway
Brite
Enzymes [BR:
pcox01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
137730814
5.6.2.5 RNA 5'-3' helicase
137730814
Messenger RNA biogenesis [BR:
pcox03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
137730814
mRNA cycle factors
Common to processing body (P body) and stress granule
137730814
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
137730814
NCBI-ProteinID:
XP_068325894
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Position
4:25848205..25861517
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AA seq
1267 aa
AA seq
DB search
MDLQPNNLFDTASQPDTANDAYTFLEFNTQGEDFDYPEFRDPIRSPVAWPTASDSLSEPA
DRDRGGGGVGSDQQSDASPVSAAPGSATKARAGGSGSNAGNNQVVDVLTAGMSVLNFEDT
GDDDNYEFGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRA
KHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMN
WDLSQWCPLIDDRCFLQWLVKVPSEQEQLRARQISAQQINKVEELWKSNPDASLEDLEKP
GVDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRIA
YFVFTKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVD
LNHGFSVDFVWKSTSFDRMQGAMKAFAVDETSVSGYIYHHLLGHEVEVQMVRNSLPRRFG
APGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSN
VAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDMSEKSELHKLQQLKD
EQGELSSNDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQAT
EPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLARSLFERLVILGVKPIRLQVQY
RMHPALSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGT
SYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIE
VASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQ
PLWNSLLTHYKEHECLVEGPLNNLKQSMVQFPKPKKIYNDRRLFYGGGPGVIPNDSFGSV
ASAGQSADRRSNRGRAGSYLPPGPPNGTHKPGVHPAGYPLPQAPLSPFHGGPLSQPYAIP
TRGAVHGPVGAVPHVPQPGSRGFGAGRGNAGAPIGGHLPHQQGTQQNVGNMGSTFNIPSL
KNPNSQPSVGGPLSQHGFVNNMPVQGPSQTFRDGFSMAGMSQECLGDDFKSQGSHVPYNV
ADFSTQASQSGYAVDYVTQGAQGGFPGNFLNQNSQAGYSRFGSGNDFMSQDYMPHGSQGL
FTQVGFNDPSQDGVANANQLQSQGFMNSLYSQPFAHYNTQPMNLQAPQQQQQQQGQTSQN
QKIHYNG
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atggatttacagcccaacaacctctttgacacggcgtcgcagcccgacaccgccaatgac
gcctacaccttcctcgaattcaacacccaaggcgaggactttgactacccggagttccgc
gacccgattcggtcccctgtcgcctggcccaccgcttcagattccttatcggaacccgcg
gaccgtgaccgtggcgggggtggagtcggatcggatcagcagtctgatgcatcaccggtt
tcagctgccccgggcagcgccacaaaggctagggcaggtgggtcgggcagtaacgctggg
aataatcaggtggttgacgtcctaactgctgggatgagtgtgcttaactttgaggacact
ggggatgacgacaattacgagtttggaaaaggggatttcacggaacatgcgtgccggtac
tgcggcgtgtcgaacccggcgtgcgttgtgaggtgtaatgtgccttcgtgtcgaaaatgg
ttctgtaattctagggggaatacgtccggctcccatattgtgaatcacctggtccgagcc
aaacacaaggaagtctgtcttcataaagatagcccattgggagaaacaatccttgaatgc
tacaactgtggatgtcgtaatgtattccttctgggatttatttcagccaagacagagagt
gttgttgttcttctttgtagggaaccctgcttaagtgttaatgcattgaaggatatgaac
tgggatctgagccagtggtgtcccctgatagatgataggtgtttcttgcagtggcttgtt
aaggtcccgtctgaacaggagcagctaagggcgcgccaaatcagtgctcaacaaataaat
aaagtagaagaactttggaagagcaatcctgatgcttcccttgaagatctcgagaagccg
ggtgtggacgatgaaccccaacccgtggccttgaagtatgaagatgcttaccagtatcaa
aatgtgtttgcaccacttattaaacttgaagctgactatgataaaatgatgaaagaatct
caaagcaaagacaatgtcacaattcggtgggatattggtcttaacaagaagcgtattgct
tattttgtgtttacaaaggaagacaatgagttgcgccttgtacctggtgatgagttgcgg
cttcgttattctggagatgcagctcatccagcatggcagtcagtgggacacgttatcaag
ttaaccgcacaagaagaggttgcacttgaacttcgtgccagtcagggagttccagtggat
ctgaaccatggcttcagtgttgactttgtctggaagagtacaagttttgatcggatgcag
ggagctatgaaagcttttgcagtcgatgagacaagtgttagtggatatatttatcatcat
ttgttaggccatgaagtagaggttcaaatggtccgtaattcattgcctcgtcgttttggt
gcacctggtcttccggagctcaatgcatctcaagtttttgctgtaaagagtgtccttcag
aagcctataagtttgatccagggtccacctggcacaggaaaaactgtgacttctgcagca
attgtgtatcacatggctaaacaaggccagggacaggttttggtgtgtgctcctagtaat
gtggctgtagaccaactagctgagaagataagtgcaactgggttgaaggttgttagactt
tgtgcaaaatcaagggaagctgtaagttctcctgttgagcatttaacccttcattaccag
gttcgtcatcttgacatgtcagaaaagagtgaacttcacaagctgcaacaattgaaggat
gagcaaggagaattgtctagtaatgatgagaaaaaatataaggcactgaagcgggcaacc
gagagggagatttctcaaagtgctgatgtcatttgttgcacatgtgttggtgctggagat
cctcgattggccaattttaggttccggcaggtacttattgatgagtcgactcaggctaca
gaacctgaatgcctgattcctttggttcttggggcaaagcaggttgttcttgttggagat
cactgccagcttggtccagtcattatgtgcaagaaagcagctcgtgctgggcttgcccgg
tctctttttgaacgcctcgttatacttggtgtgaaaccaattagattgcaggttcaatac
cgaatgcatccagccttgtcagaatttccatctaacagcttctacgagggcacacttcaa
aatggagttaccatcaatgaaaggcaatcatcgggcattgattttccttggccggttccc
aatcgtcccatgttcttttatgtacagatggggcaagaggagataagtgctagtggaaca
tcctatctgaacagaactgaggctgctaacgttgaaaagattgtcacaacattcttgagg
agtggcgtagtccctagtcagattggagtgatcacaccatatgagggacagagagcttat
attgtgaactatatgtcgagaaatggtgctctcagacagcaactttataaggaaattgag
gttgccagcgtagattcatttcaaggacgggaaaaggattatatcatcctttcgtgtgtg
aggagtaatgagcatcagggcatcggattccttaatgatcctcgcaggctcaatgttgct
ctaacacgcgctcgatatggtattgtcattcttggaaaccctaaagttcttagtaaacag
ccactgtggaatagcctgttgactcattacaaggaacacgagtgcttggttgaggggcca
ctaaataacctgaagcagagtatggtgcaatttccaaagcctaaaaagatctacaatgat
cgtcgcctattctatggtggtggtcctggagttatccccaatgacagttttgggtctgtt
gcctcagctggccaaagtgctgacagaagaagtaatcggggtagggcaggttcttaccta
cctcctggcccacccaatggtacccataagcctggtgtacatccggctggatatccatta
cctcaggcacctctttcgccatttcatggaggacccctttctcaaccgtatgctattcca
actcgtggagctgtgcatggaccagttggagctgttcctcatgtccctcaacctggaagt
cgtggttttggggcaggacgtgggaatgccggtgctccaattggcggtcatcttccgcac
cagcaaggcacacaacaaaatgttgggaatatggggtctaccttcaacattccttctctt
aaaaatccaaatagccaaccatctgttggtggccccttatctcaacatggatttgtcaat
aatatgccagttcaagggccaagccaaacgtttcgtgatggattttccatggcgggcatg
tctcaggaatgtttgggtgatgactttaaaagtcagggatcacatgttccttataatgtt
gctgacttctccactcaggcttctcaaagtggatatgctgttgattatgttactcaagga
gcacaaggtgggtttccagggaactttctgaaccagaactctcaagctggatattctcga
tttggtagtgggaatgacttcatgtctcaggactacatgcctcatggatcacaaggccta
tttactcaggtgggctttaatgacccatcacaggatggagttgcaaatgccaatcaactt
cagtctcagggctttatgaactcactgtactctcagccttttgcccattacaacacacag
ccaatgaacttgcaggccccacaacaacaacaacagcagcagggtcagacctcccaaaat
cagaaaatccactacaatggttaa
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