Pyrus communis (pear): 137731120
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Entry
137731120 CDS
T10779
Name
(RefSeq) zinc finger CCCH domain-containing protein 40-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
pcox Pyrus communis (pear)
Pathway
pcox03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137731120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcox03041
]
137731120
Spliceosome [BR:
pcox03041
]
Complex B
Other components
Prp19-related factors
137731120
Complex C
137731120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
zf-CCCH_3
RRM_YTH1
zf-CCCH
zf-CCCH_10
zf-CCCH_4
zf-CCCH_PARP12
RRM_occluded
RRM_3
Motif
Other DBs
NCBI-GeneID:
137731120
NCBI-ProteinID:
XP_068326314
LinkDB
All DBs
Position
4:458174..460627
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AA seq
456 aa
AA seq
DB search
MAHRLLRNPEADGWERSDFPIICESCLGDNPYIRMTRAEYDKECKICSRPFTVFRWRPGR
DARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDSALAIDSNDSIPRSDVNREFFAE
EHDRRARAGIDYESSYGKVRPNDTILKLQRTEPYYKRNRAHVCSFYIRGECTRGAECPYR
HEMPVTGELSQQNIKDRYYGVNDPVAMKLLNKAGEMPSLEPPEDESIKTLYVGGIDARIS
EQDLRDHFYAHGEIESIRMVLQKACAFVTYTTREGSEKAAEELYSKLVVKGLRLKLLWGR
PQAPKEEPEGANGATQQALAHGGLLPRAVISQQHNQLQQDQYAPVHFYTPPPSQARTCYP
SMDPQRMGALIPSQDRIPSVSAGSGEKNANFDRQQHYTFQTAAPPQGQYHQQFQTTAPPQ
PYSQDHDAVPPPSTLPMDQQHQHSATPSESGSTVET
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atggcgcacaggcttctgagaaatccggaggcggacggttgggaacgatcggactttccc
atcatctgcgaatcatgcctcggcgacaacccctacatccggatgacaagagccgaatac
gacaaggagtgcaagatttgcagccgccctttcacggtgttccggtggaggcccggccgc
gacgcccggtacaagaagacggagatttgccagacttgctgcaagttgaaaaacgtttgc
caagtctgcctcttggatctcgaatacggcttgccggttcaggttcgagactctgctctc
gccattgattccaacgattccatccctagaagcgacgtcaatcgcgagttcttcgccgag
gagcacgatcgaagggctagggctggcatagattacgagtcttcctacgggaaggtgcgg
ccgaacgacacaatcctgaagcttcagaggacggagccgtattacaagaggaaccgagct
catgtctgcagtttctacattcggggtgagtgcacgagaggtgccgagtgcccttaccgg
cacgagatgccagttaccggggaattgtcacaacagaacatcaaagaccgttattacgga
gtcaatgatccagtagcaatgaagctgcttaacaaggctggagagatgccctccctggaa
ccaccagaggatgagagcattaaaacgctatatgtgggcgggattgatgcgagaatatct
gagcaggatttgagggatcatttttacgctcacggtgaaatagaatccataaggatggtg
ctccaaaaagcgtgtgcgtttgtaacatacacgacgagagaaggctcagaaaaggcggct
gaagaactctatagtaaactggtagtaaagggtttgagattgaagttactctggggaagg
ccccaagcaccaaaagaggaacctgagggcgcaaatggagctacgcagcaggcgttagct
catggtggattgttgcctcgagcagtcatatctcaacagcacaaccaattacaacaggac
caatatgctccagtgcacttctacacacctccaccctcccaggcgagaacatgttatcct
tcgatggatcctcaaaggatgggtgccctcatcccgtcccaggacaggatccccagtgtg
tctgcagggtcgggcgagaagaatgccaatttcgataggcagcagcattatacatttcaa
actgcggctcctccgcaaggtcaatatcatcagcaatttcaaactacggctccaccacaa
ccttactcgcaggatcatgatgcagtgcctccgccatcaacgttaccgatggaccaacag
caccagcattctgcaacaccatctgagtctggttcaactgttgaaacctaa
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integrated database retrieval system
