Pyrus communis (pear): 137731208
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Entry
137731208 CDS
T10779
Name
(RefSeq) uncharacterized protein isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
pcox Pyrus communis (pear)
Pathway
pcox03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137731208
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcox03041
]
137731208
Spliceosome [BR:
pcox03041
]
Complex C
Other components
Step II factors
137731208
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WDR55
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
WD40_RFWD3
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_SPT8
Beta-prop_EIPR1
Beta-prop_DCAF4
WD_LRWD1
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_NWD2_C
Beta-prop_Vps41
Beta-prop_WDR75_2nd
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
137731208
NCBI-ProteinID:
XP_068326412
LinkDB
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Position
4:complement(5254843..5258458)
Genome browser
AA seq
590 aa
AA seq
DB search
MDLLRAYSDQNDDELNEPEEQNQNPKSAPSSPDSSPPHLLPAKSAAPNVDDTMLALTVAG
ANGSSTRPIDPTQHIVGFNPTYEQLWAPIYGPSHPYAKDGIAQGMRNHKLGFVEDASIEP
FVFDEQYNTFHKYGYAADPSASAGYNYVGDFEALQKNDAVSVYNIPQHEQKKRKIEKRKE
LEENEGGDEDMDPEEVQNPASDVWLMKNKKSPWAGKKEGLPTELTEEQKKYAEEYAKKKG
EEKGAGDKGEAVAEKTTFHGKEERDYQGRSWIAPPRDAKASNDHCYIPKRLVHTWSGHTK
GVSAIRFFPKYGHLILSAGMDTKVKIWDVFNTGKCMRTYMGHSKAVRDICFSNDGSRFLT
ASYDKNIKYWDTETGQVISTFSTGKVPYVVKLNPDEDKQNVLLAGMSDKKIVQWDMNEGK
INQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISL
HPNSNWLAAQSMDNQILIYSTREKFQLNKKKRFAGHVVAGYACQVNFSPDGRFVMSGDGE
GRCWFWDWKTCKVFRTLKCHEGVCIGAAWHPLEQSKVATCGWDGLIKYWD
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atggatcttctccgagcatactctgatcaaaacgacgacgaattgaacgagcccgaggag
cagaaccaaaaccctaaatccgcaccgtcgtccccagactcgtcgccgcctcacctcctc
cccgccaagtccgccgcgcccaatgtcgacgacactatgctggccctgacggtagccggg
gccaacgggtcttccacccgccccatcgacccgacccaacacatcgtcggcttcaacccc
acctacgagcagctatgggcaccaatctacggcccgtctcatccttacgccaaggatggc
atagcccaggggatgcgcaaccacaaactcggcttcgtcgaggacgcctccattgagccc
ttcgtgttcgacgagcagtacaacacgtttcacaagtatgggtatgctgctgacccttcg
gcatctgctgggtacaattatgtaggtgatttcgaggccttgcagaagaatgacgccgtt
tctgtgtataacattccccagcacgagcagaagaagcggaaaattgaaaagagaaaggaa
ttggaggagaatgagggtggggatgaggatatggacccggaggaggtccagaacccggct
agtgacgtgtggttgatgaagaataagaagagtccgtgggcgggaaagaaggagggtctg
ccgacggagctgactgaggagcagaagaagtatgccgaggagtatgcgaagaagaaaggt
gaggagaaaggcgctggtgataagggcgaggctgtggctgagaagactacgtttcatgga
aaagaagagagggattatcagggtaggtcatggattgcgccgccgagagatgctaaggca
tctaatgatcactgttatattccaaagaggttggtgcacacttggagcgggcacacgaag
ggtgtgtctgctattaggttcttccctaagtacgggcatttgattctgtctgccgggatg
gataccaaggtgaagatttgggatgttttcaataccggtaagtgtatgagaacttacatg
ggtcactcgaaggcagttcgggatatttgtttttctaatgatgggagtaggttcttaact
gctagttatgataagaatatcaagtactgggatacagaaaccgggcaggtgatatctaca
ttctcgactgggaaggttccttatgtggttaagttgaacccggatgaggataagcaaaat
gtgttgttggctggtatgagtgataagaagattgttcagtgggatatgaatgagggaaag
atcaatcaagagtatgatcagcatttgggtgctgtgaatacgattacatttgtggataat
aaccgtaggtttgttacttccagcgatgacaagtcgcttcgcgtatgggagtttgggatc
cctgtggttattaagtatattagtgagcctcacatgcattccatgccatcaatttcgctg
caccccaattccaattggcttgcggcacagagtatggacaatcagattctgatttatagc
actagggagaagtttcagctcaataagaagaagaggtttgccgggcatgttgttgccggg
tatgcttgccaagtcaatttctcgccagatggacggtttgttatgtcaggtgatggtgaa
ggtcgatgctggttttgggattggaagacatgcaaagtcttcagaactctcaaatgtcat
gaaggggtatgcattggggcagcatggcatcccttggagcaaagtaaagttgcaacatgt
ggctgggatggcttaatcaagtattgggactag
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