Pyrus communis (pear): 137731265
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Entry
137731265 CDS
T10779
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pcox Pyrus communis (pear)
Pathway
pcox03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137731265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcox03041
]
137731265
03009 Ribosome biogenesis [BR:
pcox03009
]
137731265
Enzymes [BR:
pcox01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
137731265
Spliceosome [BR:
pcox03041
]
Complex A
U1 snRNP components
U1 related factors
137731265
Complex B
137731265
Ribosome biogenesis [BR:
pcox03009
]
Eukaryotic type
Pre-60S particles
Helicases
137731265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
Transformer
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
137731265
NCBI-ProteinID:
XP_068326465
LinkDB
All DBs
Position
4:8802417..8809030
Genome browser
AA seq
1164 aa
AA seq
DB search
MATEEPAGPRYAPDDPTLPNPWKGLIDGSTGLLYYWNPETNVTQYEKPASLPPPLPAGPP
PATATPQLAAIPVAHSVQPKGVMPQDGQQIMQAPQQHGSQVSQFSQQHGHLMAQQMNLTL
YAQQQGSQMAQPGHQQSSQLGQPMQQHGQMMQHPGQQMPQAQVHQGQQVPQQLGQHTPQG
HGSQGQQRLQQLGQHTPQSHGSQMHPFAHQQMHYRPYQQSIPPQGQQSSQPQTLHNAQAQ
PLANQQEYKAAFPQREEDDFQQRNQIGVSPSRFQQAGASSVQNLPTGTNPVQMPQRSVHQ
GPTQQFGGPLGNMQHPSSFGHLQQPGADLAHHQHGSRFQSQMDPAMIHGQQSNGPPAGLR
MGHENNFHGQGGNDYYFNSNNEGTTGPQQPKLASIPIAKSQQEMSGGPPFQNATPGHSNA
LNTMPGHSMHNVYSHATGAPPFPNNSLVKPPYVRPTSLTSLSPVEVYRQQHEVTASGDNV
PAPFMTFEDTGFPPEILREIHAAGFASPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYL
MPAFILLRQRHNNSQNGPTVLVLAPTRELATQIQDEVLKFGRASRVSCTCLYGGAPKGPQ
LKELDRGADIVVATPGRLNDILEMKKIDFRQVSLLVLDEADRMLDMGFEPQIRKIVDQIP
PHRQTLMYTATWPKEVRKIASDLLVNPVQVNIGSVNELAANKAITQYVEVVPQMEKQRRL
EQILRSQERGSKIIVFCSTKRLCDQIARSIGRTFGAAAIHGDKSQGERDWVLNQFRSGKC
PILVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVSYTFFSEQDWKY
AADLIKVLEGANQQVPPEVREIALRGGPGFGKDRNPMNRFDSGGPVNGAAGRWDSGGRDG
MRDGGFGGRGSTRDGGFGGRGGMRDGGFGGRGGMRDGNFGGRGSMRDGNFGGREGPRDGA
GSGRGGRGDFFSGPGNRGRGFGGPGGGNVGWGRSGSGPQDRYNSMAGRGGRGRGRFDNRV
DFPDRSRGRNYSRSPDRVRTWDINRSRSRSRSRSRSWSRSRSRSWTRSRSRSWSRDRSRS
HSRNRSRSPSYERYERPPRVSKFDMKDPVPESVVPPVPEMLPTSPDTQVNVYPDTKPVGE
LPVVEQTGLVDTQGGGDPSHHSLI
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagaggagccggctggtccacggtatgcgccagatgatcctacacttccaaat
ccgtggaagggtttgattgatggtagcacgggtttgttatactactggaatcctgaaact
aacgttacccagtatgaaaaaccggcttctttgcctccgcccttgccagcaggcccacct
cctgctactgccacgccacagctggctgcaattcctgttgctcattcggtgcaaccgaag
ggagtgatgcctcaggatgggcagcagataatgcaagctccacaacagcatgggtcgcaa
gtgagccagttttctcaacagcatggacatctaatggcacaacagatgaatctgacatta
tatgctcaacagcagggctcacaaatggctcaacctggacatcaacagagttcacaattg
ggacagcccatgcaacagcatgggcaaatgatgcagcatccgggtcagcaaatgccccag
gcacaagtgcatcaagggcagcaagtgcctcaacaactgggacaacacacaccacagggt
catgggtcacaagggcagcaaaggcttcaacaactgggacaacacacaccacagagtcat
gggtcacaaatgcatccgtttgcacatcagcagatgcattataggccttatcagcaaagc
attcctccccaagggcaacagagttcacaaccgcaaactctgcataatgcacaagcgcaa
ccactggcaaatcaacaagaatataaagctgcattcccccagagggaggaagatgatttt
caacaaagaaatcaaattggtgtttctccatcccggtttcaacaagcgggagcctcatct
gtgcagaatcttcctactgggaccaatccagtacaaatgccacagaggtctgttcatcaa
ggcccaactcaacaatttggtggccctttgggaaacatgcaacatccttcctcttttggt
cacttgcagcaaccaggggctgatttggctcaccatcaacatggttctaggttccaaagt
caaatggacccagcaatgatacacggtcagcagtcaaatgggcctcctgctggattaaga
atgggtcatgaaaataatttccacggtcaaggtggaaatgactattacttcaatagtaac
aatgaagggacgacaggtcctcagcagcccaagcttgcatctattccgattgcaaaaagc
cagcaggagatgagtggtggccctccatttcaaaatgctacacctggtcattccaatgcc
ctgaataccatgcctggtcattccatgcataatgtgtacagtcatgcaacaggtgctcca
ccattcccaaataactctttggtgaagcccccttatgtcaggcctacaagtctcactagt
ctctcacctgttgaagtttatcgtcaacaacatgaagttactgcatcgggtgacaatgta
cctgcaccatttatgacatttgaagacactggttttcctccagagatattgagagagatt
catgctgctggcttcgcatctcccacgccaattcaggcacaaacatggccaattgctctt
caaagtagggatatagttgcaattgcaaaaactggttctggaaaaactttgggctatttg
atgcctgcattcattcttcttagacaacgccataataattctcagaatggcccaacagtc
ctggttttggccccaacacgggagcttgcaacacagatacaagatgaggttttgaaattt
gggcgagcttctagggtatcttgcacgtgcttgtatggtggagctccgaagggccctcag
ctaaaagagttagatcgtggagcagacatagttgtggcaactcctggtcgtcttaatgac
atattggaaatgaagaaaattgattttcggcaagtttctctacttgtacttgatgaagca
gatcgaatgcttgacatgggttttgaacctcaaatccgtaaaatcgtggatcaaataccc
ccgcacagacaaactcttatgtacacagcaacatggcccaaagaagtaagaaaaatagca
agtgatcttcttgttaatcctgtacaagtgaatattggcagcgttaatgagcttgctgca
aacaaggctatcacacagtacgttgaagttgtcccacaaatggagaagcaaaggcgtttg
gagcagatcctgagatcccaagaacgaggttctaagatcattgtcttttgttccaccaag
aggttgtgtgatcagattgcacgtagtattggacgcacttttggggctgctgcaattcac
ggggacaagtctcaaggtgagcgagactgggttttaaatcagttccggagtggaaaatgc
ccaatattagttgccactgacgttgctgctcgtgggcttgacatcaaagatataagggtg
gtggtaaactatgatttccctactggtgtggaagactatgttcaccgaattggaagaact
gggagggctggcgcaactggggtgtcatacacctttttctctgagcaagactggaaatat
gcagctgatttgattaaagttctggagggagctaaccagcaagtgcctccagaggtgcga
gagattgctctacgtggtgggcctggttttggcaaggataggaatccgatgaaccgtttt
gattctggtgggcctgttaatggtgctgctggacgttgggattccggtggccgtgatgga
atgagggatgggggttttggtggtcgtggcagtacgagggatgggggctttggaggtcgt
ggtggcatgagggatggtggttttggtggtcgtggcggcatgcgagatggcaactttgga
ggtcgtggcagcatgcgagatggcaactttggcggtcgtgagggccctagggatggtgct
ggtagcggccgaggtgggagaggcgatttcttttctgggcctggaaacaggggccgagga
tttggtggtcctggtggtggtaatgttggttggggtagaagtggcagtggcccgcaagat
cggtacaacagtatggctggccgtgggggacgtggacggggacgatttgataatagagtt
gattttcctgacaggagcagaggcagaaactatagccgtagccctgacagagttcgaaca
tgggatattaacagaagcagaagccggagtcgaagccgcagccgtagctggagtaggagt
aggagtcggagctggaccaggagtcgtagccggagctggtcccgtgaccgtagccgaagt
catagtcgcaaccgtagtcggagccccagttatgaaagatatgagaggccgccacgtgtg
tcaaaatttgatatgaaggatcctgttcccgaatctgtggttccacctgtaccagagatg
cttcctacgtccccagacacacaagtcaatgtatatccagacaccaagcccgtgggggaa
ctgccagtggttgagcaaacggggctagtggatacacagggcggaggagacccttcccat
cactcattgatttaa
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integrated database retrieval system
