Pyrus communis (pear): 137733896
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Entry
137733896 CDS
T10779
Name
(RefSeq) zinc finger CCCH domain-containing protein 40-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
pcox Pyrus communis (pear)
Pathway
pcox03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137733896
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcox03041
]
137733896
Spliceosome [BR:
pcox03041
]
Complex B
Other components
Prp19-related factors
137733896
Complex C
137733896
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
zf-CCCH
zf-CCCH_3
RRM_3
zf-CCCH_10
RRM_YTH1
zf-CCCH_4
RRM_occluded
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
137733896
NCBI-ProteinID:
XP_068329210
LinkDB
All DBs
Position
5:complement(21551290..21554143)
Genome browser
AA seq
498 aa
AA seq
DB search
MAHRLLRNVEADGWERSDFPIICESCLGDNPYVRMTRADYDKECKICTRPFTVFRWRPGR
DARFKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALAIGSDDAIPKSDVNREFFAE
EHDRKARAGIDYESSYGKARPSDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYR
HEMPITGELSQQNIKDRYYGVNDPVAMKLLNKAGEMPSLEPPEDGSIRTLYVGGLDARIS
EQDLRDQFYAHGEIESVRMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGR
PQAPKQESEGTAEARQQAVAHGGLLPRAVISQQQNQSQDPAAPVNYYNMPPPPSQERSFY
PSMDPQRMGALIPSKEGAPSGTTGSGECSSASERQQHSQHYAFQNMAQPHGQYRQQFYPP
AYGYMPPPAPQYQQYPPQYHSAVPPPPSLPMNKQYQNSATPGPAPTGSTPSGSAPSSSGP
SEPTPSGSGSAPTGSSQQ
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atggcacacaggttgcttaggaatgtggaggcggatggttgggaacgatcagattttccc
atcatctgcgagtcatgcttgggtgacaatccctacgtccggatgacacgagctgattat
gacaaggagtgcaagatttgcacgcgtccgttcacagttttcaggtggaggcctggtcgt
gatgcacgatttaagaagtcggagatttgccagacgtgcagtaagttgaaaaacgtttgt
caagtttgcctcttggatctggaatatggtttgccagttcaggttcgagatacagctcta
gccatcggttctgatgatgccattccaaagagtgatgtaaatagggagtttttcgctgag
gagcacgaccgtaaggctagagctggtatagattacgaatcttcatatggaaaggcacgg
cccagtgacactattctgaagcttcaaagaacaacgccctattacaaaaggaacagagca
catgtctgcagtttttacattcgtggtgagtgcacaagaggtgctgagtgcccttacaga
cacgagatgcccataactggggagttgtcgcagcaaaacatcaaagatcgttactatgga
gtcaatgatccagtggcgatgaagcttcttaacaaggccggagagatgccctccttggaa
cctcctgaggatggaagcataagaaccttatatgtgggtgggcttgatgcgagaatttct
gagcaggatttaagggatcagttttatgctcatggtgaaatagaatccgttaggatggta
ctccaacgagcatgtgccttcgtaacctacacaacaagagaaggtgcagaaaaggctgca
gaagaactctctaacaaactggtaataaagggtttgaggttgaagttaatgtggggtagg
ccccaagcaccaaaacaggaatcagagggcactgctgaagctagacagcaggcggtggct
catggtggtttgttgcctcgagcagtcatatctcaacaacagaaccaatcacaagaccca
gctgcgcctgtgaactactacaacatgccacctccaccttcacaggagagatcattctat
ccgtccatggatcctcaaagaatgggtgcccttattccatccaaggaaggggctcctagt
gggaccacagggtcaggagagtgcagttctgcttcagagaggcagcaacatagtcagcat
tatgcttttcagaacatggctcaaccacatggccaatatcgtcagcagttttatcctcct
gcatatgggtatatgcctccaccagcaccacagtaccagcaataccctccgcaatatcat
tctgcagtgccgccaccaccatccttgccaatgaataaacagtaccagaattctgcaaca
ccagggccagcacccacaggttctacaccctcgggatctgcaccttcaagttctggacct
tcggaacctactccatctggatctgggtcggcaccaacggggtcttcacagcagtaa
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