Pyrus communis (pear): 137733931
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Entry
137733931 CDS
T10779
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pcox Pyrus communis (pear)
Pathway
pcox03013
Nucleocytoplasmic transport
pcox03015
mRNA surveillance pathway
pcox03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137733931
09122 Translation
03013 Nucleocytoplasmic transport
137733931
03015 mRNA surveillance pathway
137733931
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcox03019
]
137733931
03041 Spliceosome [BR:
pcox03041
]
137733931
Enzymes [BR:
pcox01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
137733931
Messenger RNA biogenesis [BR:
pcox03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
137733931
Spliceosome [BR:
pcox03041
]
Complex C
Other components
EJC/TREX
137733931
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
137733931
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
137733931
NCBI-ProteinID:
XP_068329250
LinkDB
All DBs
Position
1:complement(7673414..7678829)
Genome browser
AA seq
426 aa
AA seq
DB search
MGETRDDVYDEELVDYEEEEEKAPDSAAKVNGEAPKKGYVGIHSSGFRDFLLKPELLRSI
VDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGQVSALVLC
HTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKLHKDLLKNECPHIVVGTPGRILALA
RDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKDIRPVCK
KFMQDPMEIYVDDEAKLTLHGLVQHYIKLTEAEKNRKLNDLLDALDFNQVVIFVKSVSRA
AELNKLLSECNFPSICIHSGMSQEERLKRYKGFKEGQNRILVATDLVGRGIDIERVNIVI
NYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNDVQERFEVDIKELPEQIDT
ATYMPS
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaaacaagggacgacgtctacgacgaggagctcgtcgattacgaagaagaggag
gagaaggcccctgactctgcggctaaagtcaacggcgaagcccccaaaaagggatatgtt
ggaattcacagttcagggttcagagatttccttttgaagcctgagcttcttcggtctatt
gtcgactctggatttgagcatccttctgaagtgcaacatgaatgtatccctcaagctatc
ctcggaatggatgttatttgtcaagctaaatctgggatgggaaaaactgctgtttttgtt
ctatcatctttacagcagattgaccctgtcgcaggccaagtctctgcccttgtcctttgc
catactagagaattagcataccagatttgtcatgaatttgagaggttcagtacatacttg
cctgatctcaaggttgctgtcttctatggtggtgttaatatcaaacttcacaaagattta
ctgaaaaatgaatgcccgcacattgttgttggaactcccggaagaatactagcactggca
agagataaagacctctccttgaagaatgtgaggcattttatccttgatgaatgcgacaag
atgcttgaatcactcgacatgaggagagatgtgcaggagatcttcaagatgacgcctcac
gataagcaagtgatgatgttttccgcaacactcagcaaagacatccgcccggtttgcaag
aaatttatgcaagatcctatggaaatatatgttgatgatgaagccaagttgaccttgcat
ggtctagtgcagcactacatcaagttaaccgaggcagagaagaaccgcaagttgaatgac
ctccttgatgcattggacttcaatcaagttgttatattcgtcaaaagcgttagcagagct
gctgagctgaacaaactgctttcagagtgtaactttccctctatatgcatccattctgga
atgagccaagaagaaaggttgaagcggtacaaaggattcaaggagggtcagaacaggatt
ctcgtggcaactgatttagtcggtagaggaatcgacattgagcgtgttaacattgttatc
aactacgacatgccagattctgctgacacttatttacacagggttggcagagctggtagg
tttggcaccaaaggtcttgctattacgtttgtttcatccgcagcagactctgatgttcta
aatgatgttcaggagaggtttgaggttgacataaaggagcttcctgaacagatcgatact
gccacatacatgccatcttaa
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