| Entry |
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| Name |
(RefSeq) regulator of nonsense transcripts UPF2-like
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| KO |
| K14327 | regulator of nonsense transcripts 2 |
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| Organism |
pcox Pyrus communis (pear)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:pcox00001]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
137734094
03015 mRNA surveillance pathway
137734094
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:pcox03019]
137734094
Messenger RNA biogenesis [BR:pcox03019]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
137734094
mRNA cycle factors
P-body specific factors
137734094
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
5:complement(22072288..22083337)
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| AA seq |
1185 aa
MDHHEEECRAGNEPHGKQDDEEAAARLEEIKKSIEAKMALRQSNLNPERPDTGFLRTLDS
SIKRNTAVIKKLKQINEEQREGLMDDLRVVNLSKFVSEAVTAICDAKLRSSDIQAAVQIC
SLLHQRYKDFSPTLLQGLLKVFFPGKSGDDLEADKNLRAMKKRSTLKLLLELFFVGVIED
GGIFVNIIKDLASGEHLKDRDTTQTNLTLLASFARQGRMFLGLPLAGPEIHEEFFKGLNI
TTDQKKFFRKAFQTYYAAAAELLQSEHTSLRQMEHENAKILNAKGELSDESVSSYEKLRK
SYEHLYRNVSSLAEALDMQPPVMPEDGHTTRVTSGEDASSPVAGKDSSALEAIWDDEDTR
AFYECLPDLRAFVPAVLLGEAESKSSDQSAKTQEQPTEPALESDQTQQITEDTGEASADV
GALQEAKSTEKGKDKEEKDKDKIKDPDKEKADRKVENDKEKLKSIEGTNLDALLQRLPGC
VSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLAYYSRLVATLSTCMKDVSSM
LLAMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKIAPAGLVFSCLKACLDDFSHHN
IDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPE
RSARVTKVRPPLHQYIRKLLFSDLDKSTIEHVLRQLRKLPWGECEPYLLKCFLKVHKGKY
GQIHLIASLTAGLSRYHDEFAVSVVDEVLEEIRLGLELNEYGMQQRRIAHMRFLGELYNY
EHVDSSVIFETLYLVLAFGHGTPEQDVLDPPEDCFRMRMVITLLETCGHYFDRGSSKRKL
DRFLMHFQRYILSKGVLPLDVEFDLQDLFADLRPNMARYSSIEEVNAALLELEERDRTVS
IEKHSDTEKPSRRNTSDEMSVNGKSIVNGTGENGVVHGNLGDSDSDSGSGTIDRDRHNEE
GLGEENHDGGSDSDEDDDDGGGPASDEDDEVHVRQRVAEVDPQEAEKFELDLKAVMQESM
EQRRLELRGRPTLNMMIPMNVFEGSTKDHHGRGVGGESGDEALDEESGGSKEVQVKVLVK
RGNKQQTKQMYIPRDCSLIQSTKQKEAEELEEKQDIKRLVLEYNDREEEELNGLGNQTLN
YMQSGGNRLAGRGSTWEGASGRGGGARHRYHSSYSGGGAFYSRKK |
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| NT seq |
3558 nt +upstreamnt +downstreamnt
atggatcaccatgaggaggaatgccgtgctggcaatgaacctcatgggaagcaagatgat
gaggaagctgctgctaggcttgaggaaatcaagaaatctattgaggcaaagatggctctt
cgtcaaagcaatctgaaccctgagcggcctgatacaggattccttaggacactggattct
agcattaaacgcaacacagcggttattaaaaaactgaagcagataaatgaagagcagcgg
gaagggttgatggatgacttgagagttgtcaacctgagcaaatttgtcagtgaagctgtt
actgctatttgtgatgccaagcttagatcgtcagacatacaagcagcagtccagatctgc
tctctgctccatcaaaggtacaaagacttctccccaactctgcttcaaggtcttttgaaa
gtcttctttccggggaagtctggggatgacttagaagcagacaagaacttgagggccatg
aagaagcgaagcactttgaaactccttttggaacttttctttgttggagttatagaagat
ggtggtatttttgtgaatatcattaaggatcttgccagtggagaacacttaaaggatcgg
gatactactcagacaaatttgactcttcttgctagttttgctcgtcagggaagaatgttt
cttggccttccacttgctgggccagaaattcatgaagagttttttaagggccttaatatc
acgacagatcaaaagaaatttttcaggaaggcatttcaaacatattatgctgctgctgca
gaactgctgcaatctgagcatacttcacttcgccaaatggagcatgaaaatgctaaaatc
cttaatgctaaaggagagctcagtgatgaaagtgtctcatcatacgagaagctgcggaaa
tcttatgaacatttgtaccgcaatgtctcatctttagcagaagcacttgatatgcaaccc
ccagtaatgccagaggatggccacacaacgagggttactagtggggaggatgcttcatct
cctgttgctggaaaggattcttcggcactcgaagccatatgggatgatgaagatacaagg
gctttctatgaatgcttaccagatcttagagcatttgttccggcagtattattgggagaa
gcagagtctaaaagcagtgatcaatctgcaaagacccaggaacaaccaactgaacccgca
cttgaatcagatcaaactcaacaaattacagaagatactggagaggcttctgcagatgtt
ggtgctttacaagaggccaaaagcacagagaaaggaaaggacaaagaagaaaaagataaa
gacaagatcaaagatccagacaaagagaaagctgacagaaaagtagagaatgacaaagag
aagctcaaaagtattgaagggacaaatttggatgctttactgcagaggcttcctggttgc
gtgagccgtgatcttattgatcagttgactgtggagttttgttatttaaattcaaaagca
aatcggaaaaagcttgtgagggcattatttaatgtccctagaacatcattggagctacta
gcttactactcgcgtttggttgctacactctcaacttgtatgaaggacgtctcatccatg
ctcctagcgatgttggaagaagagttcaacttcttaattaataaaaaggaccaaatgaac
attgaaacgaagattaggaacattagatttattggagaactctgcaagtttaagattgca
ccagctggtcttgtctttagttgtttgaaggcttgtttggatgatttcagtcatcataac
attgatgttgcttgcaatcttcttgagacttgtgggcgttttctgtatcggtctcctgaa
actactgtgcggatggctaacatgttggaaatattaatgcgattgaagaacgtaaaaaat
ttagaccctcggcacagcacccttgttgaaaatgcttactacctatgcaaaccacctgag
agatctgcacgggtcactaaagtccgtcctccattgcatcagtatataagaaagttgcta
ttctcagatcttgataagtctaccatagagcatgtgctcaggcaactgcgtaaattacca
tggggtgaatgtgagccgtatcttttaaaatgctttctgaaggttcacaaagggaagtat
ggtcagatccacttgattgcttctctcaccgctggtttgagccgctatcatgatgaattt
gctgtatctgttgttgatgaggttctagaggagatacggcttggcctagaattaaatgag
tatgggatgcagcaaagacggattgcccatatgcgatttttaggagagctatacaactat
gagcatgtagattcttctgttatttttgaaactctgtacttggttcttgcctttggccat
ggcacaccagagcaagatgtactggatccaccagaagattgtttccgcatgaggatggtt
attactcttcttgaaacctgcgggcactactttgaccgaggctcttccaagaggaaactt
gatcgattcttgatgcactttcagagatatatactaagtaaaggtgtactaccgcttgat
gtggaatttgacttacaggacttatttgctgatctacgccccaacatggctcggtactct
tccattgaagaagttaatgcagctcttttagaacttgaggagcgtgatcgtactgtctcc
attgagaagcactctgacactgaaaagccttcaaggaggaatacctccgatgaaatgtca
gtgaatggaaagagtattgtaaatggaaccggggaaaatggtgtagttcatggaaacctt
ggagatagtgacagtgattcgggaagtggcaccattgatcgagatagacataatgaagaa
ggattgggtgaagagaatcatgatggtggatctgacagtgacgaggatgatgatgatggt
ggtggaccggcatccgatgaggacgatgaagtccatgtcagacagagggttgctgaggtc
gaccctcaagaagcagaaaagtttgagctggatctcaaggctgttatgcaggaaagcatg
gagcaacgtaggctagagctgagaggccgaccaacattaaacatgatgataccgatgaat
gtgtttgaggggtccaccaaggaccatcatggaagaggggttggaggggaaagtggagat
gaggcattggatgaagagtctggaggaagcaaggaggtccaggtgaaagttcttgtcaag
cgtggtaacaagcaacaaacaaagcagatgtacatccctcgggattgctcacttatccag
agtacgaaacagaaagaagcagaagagcttgaagagaaacaagacatcaagaggttggtt
ttggaatacaatgacagagaagaggaggagcttaatggattggggaaccagactctgaac
tatatgcagagtggcggtaatagacttgctggccgtggcagcacttgggaaggagctagc
ggtagaggtggtggagcacgtcatagatatcacagtagttattccggtgggggagctttc
tacagcaggaaaaagtaa |
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