Pyrus communis (pear): 137734829
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Entry
137734829 CDS
T10779
Name
(RefSeq) replication factor C subunit 1-like isoform X1
KO
K10754
replication factor C subunit 1
Organism
pcox Pyrus communis (pear)
Pathway
pcox03030
DNA replication
pcox03410
Base excision repair
pcox03420
Nucleotide excision repair
pcox03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
137734829
03410 Base excision repair
137734829
03420 Nucleotide excision repair
137734829
03430 Mismatch repair
137734829
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcox03032
]
137734829
03400 DNA repair and recombination proteins [BR:
pcox03400
]
137734829
DNA replication proteins [BR:
pcox03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
137734829
DNA repair and recombination proteins [BR:
pcox03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
137734829
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
RCF1-5-like_lid
PTCB-BRCT
AAA_22
AAA_30
Rad17
AAA_19
BRCT_2
Gp44_lid
AAA_18
nSTAND3
AAA_16
AAA_5
RuvB_N
AAA_assoc_2
AAA_14
Zeta_toxin
AAA_24
Sigma54_activ_2
AAA_17
AAA_28
DNAX_ATPase_lid
Motif
Other DBs
NCBI-GeneID:
137734829
NCBI-ProteinID:
XP_068330222
LinkDB
All DBs
Position
5:complement(4995657..5008488)
Genome browser
AA seq
961 aa
AA seq
DB search
MADIRKWFMKSHDKGNTKKPEATVSQKTEPKEPVQGGQENSGKRKTSKYFPTDKPKDEKG
TTEVPAKRKPHKDPDESVKPSPAKKAHKVDDDDDDDDFVSPNSKKKSVDATPSKKLKSTS
GTGIPQKVTAIDEGGDEDEKVAKSSLKPAGRGRGGRGASAVPAGGRGRGAGRGGFMNFGE
RKDPPHKGEKEVPEGAPNCLAGLTFVISGTLDSLEREEAEDLIKRHGGRITGSVSKKTNY
LLCDEDIEGRKSSKAKELGTAFLTEDGLFGMIRASIGDKIPVQEAKKSVDDAAAASLPSK
SPKKVTLKKDCTGSSLASSASSKQLQSDASLARHKKQTTEHSTFTWTEKYRPKVPNDIIG
NQSLVKQLHDWLSHWNEQFLDTGDKKKGKNPTNSGAKKAVLLSGTPGIGKTTSAKLVSQM
LGFQAIEVNASDSRGKADSKIEKGIGGSNANSIKELVSNKALSMDGSKHPKTVLIMDEVD
GMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRL
MQVANAEGLQVNEIALEELAEKVNGDMRMAVNQLQYMSLSMSVIKYDDVRQRLLSSSKDE
DISPFTAVDKLFGFNAGKLRMDERVDLSMSDPDLVPLLIQENYINYRPSAAVKDDSGIKR
MNLIARAAESIGNGDIFNVQIRKYRQWQLSQSASLSSSIIPAALLRGQRETLEQGERNFN
RFGGWLGKNSTLGKNRRLLEDLHVHLLASRESSSGREIVRVEYLSLLLKRLTMPLRELPK
DEAVQEVVEFMNTYSISQDDFDTIVELSKYQGHPNPLDGIVPAVKAALTKAYKEGSKTRM
VRAADFVTIPGMKKAPKKRIAALLEPSDDAIGENIDDTLVQSEDENSSDTEDLEGSAVGE
KLQKELQSLNTKGVQVQFDLKGAPNTSAKKTPAGRGRGGSAAAASVKKGGRGSGAGAKRK
R
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
atggcagatattaggaagtggtttatgaagtcgcacgacaagggaaacaccaagaaaccg
gaggcgaccgtttcacagaagactgagcctaaagaaccagtgcaaggaggtcaagaaaat
tctggcaagaggaaaactagcaagtatttccccacagataagccaaaagatgaaaaagga
acaactgaagttccagccaaaagaaagcctcacaaggatcctgatgaatctgttaaaccc
tcacctgcaaaaaaagctcacaaagttgatgacgacgacgacgacgacgattttgtctct
cctaattcgaagaagaagtcagttgatgccactcctagtaagaaattgaagagcacatct
ggcacgggaatcccacagaaggttacagctattgatgaaggtggcgatgaagatgaaaag
gttgccaaatcatccctcaagccggctggtaggggtcgtggtggaagaggtgcttcggca
gtaccagctggtggaagaggcaggggtgctggacgaggcggatttatgaattttggagaa
aggaaagatcctccacacaaaggagaaaaggaagttcctgaaggtgctcctaattgttta
gctggcttgacttttgtaattagtggtacacttgacagtttggaaagagaagaagcagag
gatttaattaaacgtcatggcggtcgtattactggatctgtcagcaagaaaacgaactat
cttttatgcgatgaagatattgagggaaggaaatcctccaaagccaaagaacttggtacg
gcttttcttaccgaggatggattgtttggcatgattcgggcgtctattggtgacaaaata
cctgtacaagaagcaaagaaatctgtggatgatgctgcggcagcatctttgcccagtaaa
agccctaagaaagtaacattgaagaaagattgcaccggaagctcgttggcatcaagtgca
tctagcaaacagttgcagtcagatgcctcccttgctaggcataagaagcaaactaccgag
cattctacttttacttggacagaaaaatataggccaaaggttccaaacgacattattggc
aatcaatcactggtaaagcagcttcatgattggttgtcacattggaatgagcaatttctt
gatactggagataagaaaaaaggaaaaaacccaaccaattctggtgcaaaaaaggctgta
cttttaagtggaacacctggtatagggaaaacgacgtctgcaaagttagtcagtcagatg
cttggtttccaggcaattgaggtaaatgctagtgacagtcgtgggaaagctgattcaaag
attgaaaagggaattggtggaagcaatgcaaattcaattaaagagcttgtcagtaacaag
gccctgagcatggatggatcgaagcatccaaaaactgtgctgattatggatgaggttgat
gggatgtctgctggagatcggggaggagttgctgatcttattgctagcataaagatttca
aaaattcctattatctgcatttgtaatgatcgttacagtcagaaactaaaaagtcttgtg
aactactgtttgcttctcagttttcgcaaacctaccaagcaacagatggcaaagaggttg
atgcaagttgcaaatgctgaaggccttcaagttaatgagattgctcttgaggaacttgct
gaaaaagttaatggagacatgcgaatggcagttaaccaattgcaatatatgagcctctca
atgtctgtcattaaatatgatgatgtacggcagcgtttattaagcagttcaaaggatgaa
gatatttcaccattcacagctgttgacaagctgtttggttttaatgctggaaagctgcga
atggatgagcgagttgacctgagtatgagtgatcctgacctagtccctctactaatccag
gaaaattatatcaactataggccaagtgcggctgttaaagatgatagtgggattaaacgt
atgaacttgattgcccgtgccgctgagtctattggcaatggagatattttcaatgtacag
attaggaaatatcggcaatggcagctttcccaaagtgcttctctttcatcctctataatt
cctgctgcgttgttgcgggggcaaagagagacacttgagcagggagaaaggaattttaat
agatttggagggtggctgggaaagaactcaacattaggaaagaatcgtaggctcttggaa
gatttgcatgtccatcttcttgcttctcgtgaatctagttcggggagggaaatagtgcga
gttgaatacctttctcttcttctgaaacgattgaccatgcctctccgtgaactgcctaag
gatgaagcagtgcaggaagttgtggagttcatgaatacttactccattagtcaggatgac
tttgatactattgtggagttatccaaatatcaggggcatccaaatccgctagatggcata
gtgcctgctgtaaaagcagctctgacaaaggcatacaaagaaggaagcaaaacaaggatg
gtacgagctgcagattttgtcactattcctggaatgaaaaaggcccctaagaagcggatt
gctgcgcttttagaaccatctgatgatgcaattggagagaacattgatgatactttggtt
cagagtgaagatgaaaattcgtcagatacagaggacttggaaggttcagctgttggtgag
aagctgcaaaaggaactgcaaagtttgaacacaaaaggagtgcaagtacaattcgatttg
aagggtgcgccaaatacaagtgcaaagaagacaccagctggcaggggtagaggtggttct
gctgctgctgccagcgtgaaaaagggcggccgaggttcaggagctggtgccaagagaaag
agatga
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