Pyrus communis (pear): 137737025
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Entry
137737025 CDS
T10779
Name
(RefSeq) uncharacterized protein isoform X1
KO
K19026
spatacsin
Organism
pcox Pyrus communis (pear)
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcox03400
]
137737025
DNA repair and recombination proteins [BR:
pcox03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
137737025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
137737025
NCBI-ProteinID:
XP_068332473
LinkDB
All DBs
Position
1:complement(26131310..26156647)
Genome browser
AA seq
3232 aa
AA seq
DB search
MDLSLVDKGPAAAAVLQLQRWGPSLAHLNLSEFRQAFISPTRQLLLLLSYHSEALFIPLL
SGDSTTGSSNLETGSGFCSQPLTPPGKSDSIGDDSVLDFDNDFTFDREIARSENYPFVGD
VNSLAWGICEDNYDQNKDALFSEILFVSGKQGLVVHAFVESTRNTDVDRNALHGEYVQGR
WVEWGPSASLVENTVVEEATSLSVNATGNIDLNRANGDGESPHNKCNVPGNDELPKGVAS
KKWLQSFLTKVETVEYNGNILTKFPEKSLFPCSAKVVSFGLFNSNLPFLDFLSNSDSVSN
ECTQETIHKSESDNSINTHLTSSGPHFKSEILSNIFGFGMNCLYKCSRVFSSNSHCFIGF
VFTQVDPVTLNTSDESEITKKNNVLLVARLDRRGIQCVSSVKLDECPIIGSVVQWTDFQF
SDSLLICLNASGLVVFYGVMSGEYVAHLGISQTLGLNPQLDFHKQGALSLRSEKHSTEFD
GVDDKRVLQHGDYSDRRMFKRLIAASHTSLIAVVDDYGVIYVISAGDYIPGMYYENEKLL
PHIQQQRLGMLGGWEVGGCDIGHQRVYSNISGSQNSIVQSMTNDRSSFPDDCGSNVLRNQ
ELDRKQEGKGSSSFLGRFSASKLTDHKPYYSENKPHLMRKIFLPPHKFREYDPICFSPLG
ITRLVKNRNMMNPKGSHIVHLNLHAEFVVCDDNFLNTRCEMFYLQGREEAFIGEAVGCTF
QGCFYLVTESGLSVVLPSVSVSSNFLPLEVIGCGQLTNSGTGDKVKSTREMKESQQPWSP
WNVEILDRVHLYESAEEADRLCLENGWNLKVSRMHRLQLALDYLKFDEIERSLEMLVGVN
LAEEGVLRLLFAAVYLMLHKVGNDNEVSAASRLLALATCFATKMIRKYWLVEHKKDAYEY
DRTQMLSLLPVLPEKVQDEVENSRRLCEMAQFLEIIRNLQSRLGSKYKRPGRELVDSGET
SALLDNGLSQDESQLIVVSVDPVSLETSEQQDFPVSTSAFNYSENLALTPVDPAVHLDPE
DLSEVSLVPRGGFLEKKILPLENPKEMIARWKIDNLDLKAVVNDALLTGRLPLAVLQLHL
HRSRDSVPGKEPHDTFTEVRDIGRAIAYDLFLKGESGLAVATLQRLGEDVEASLKQLLFG
TVRRYLRVQITEEMNRYGYLGPYEWKILDRISLIERLYPSSSFWKTLHGRQKEFIRIPAC
SSLPKRYYLRLLHSHAFNNSTIECDDIDGVVFGSWANVNENPSVRMVDEDSAYAGYWACA
AVWFSFYDQRTIERIVLDQPSFMGVHVLWESQLEYHVCHSDWEQVSRLLDLIPPQFLAVG
SLQVSLDGLQPVSNVGCSRGSDYGAYLCSIEELDAVCLDVPEIKVFRFSCNNMSSIWLRM
LMQEKLARSFIFLKEYWEGTADILLLLARSGFITSKYEVPSKDDKIESLSVPQFPDERGK
FHVGTLQALHKLLIHHCAQYNLPYLLDLYLDQHELLQDNNSYASLQEAAGDCEWARWLLL
SRVKGCEYEASFSNARAIMSRNLVPGSNLSVPEMDEIIRTVDDISEGGAELAAVATLMYA
SVPIQSCLSSGSVTRHSSTSAQCTLENLRPTLQRFPTLWQSFVSACFGHDPISSFWGPKA
NNDYINWRCKIFFSSGCDTSLRQILPCWYPKPLRRLIQLYVQGPLGWQTVSGLPIGEGLL
HRDAEFFINADGDTEFSAISLEAAIQKHIQEELYNSALEENSLGLEHHLHRGRALAAFNH
LLTARIQKLKSERQAHGQTNVQADVQTLLGPIKESEKSLLASVVPFAIMHFEDSVLVASC
ALLLELCGFSASMLRIDIAALRRISSFYKSNENIESLRQLPTKSSEFHAVSHESDITVSI
ARALADEYLHQDISRNGKQKGTPNVAAGKQSSRALMLVLHHLEKASLPQTVDVKTCGSWL
LSGNGDGMELRSKQKAASHHWNLVTVFCQMHHLPLSTKYLSVLARDNDWVGFLSEAQIGG
YPFDTVVQMASKEFSDPRLKIHISTVLKGMQLRRKASSSSYIDTTEKNSEVPFPEENICV
PVELFRILAECEKQKFPGEAILLKAKELSWSILAMIASCFSDVSPISCLTVWLEITAARE
TSSIKVNDIASRIARNVGAAVEATNSLPAGSKGMCFHYNRKNSKRRRLLEPISRDPSDAS
ISNISNSLPCANIFDSPGLISKGERKIELGESMNVSSDSEEGPALLSKMVAVLCEQHLFL
PLLRAFEMFLPSCSLLPFIRALQAFSQMRLSEASAHLGSFSARIKEESTRLPVNVGREAQ
IGTSWISFTAIKAADSMLLTCPSPYEKRCLLQLLASTDFGDGGSAAIYYRRLYWKINLAE
PLLRKDDTLHLGSETLDDVSLATGLENNRHWEQARNWARQLEASGAPWKSAVHRVTENQA
ESMVAEWKEFLWDVPEERIALWGHCQTLFIRYSFPASQAGLFFLKHAEALEKDLPARELH
ELLLLSLQWLSGMITLSSPAYPLHLIREIETKVWLLAVESEAHIKDEGDFNLSSSSRDPI
MKNSSSIIDRTACLITKMDNHVGTFKNRTVEKHDLRENNQAHNKNYVLDTSFPMTTGGST
KTKRRTKGYGPLRRPPLDAVEKHTDLHDGSNPPNVRSDLQSQDENIKMEMSFSRWEEGVG
PAEPESAVLSLLEFGQIAAAKQLQHKLSPDKIPYEFVVVDAALKLAGMSSSKKVSLSMLD
EEVRSVMQSYNILNEQHQVDPVQVLESLATNLSEGCGRGICKKIIAVTKAATILGISFSE
AFDKQPIELLQLLSLKAQESFEEAHLLVRTHSMPAASIAQILAESFLKGLLAAHRGGYMD
SQKEEGPAPLLWRFSDFLKWAELCSSEQEIGHALMRLVITGQEVPHACEVELLILSHHFY
KLSSCLDGVDVLVALAATRVEAYVSEGDFSCLARLITGVGNFHALNFILGILIENGQLDL
LLQKYSAAADASSGTAEAVRGFRMAVLTSLKHFNPNDLDAFAMVYNHFDMKHETAALLES
RAEQSSEQWYGRYDKDQNEDLLDSMRFYIEAAEVHKSIDAGNKTRAACAQASLVSLQIRM
PDFQWLYRSETNARRALVEQSRFQEALIVAEAYGLNQPSEWALVLWNQMLKPEVMEEFVA
EFVAVLPLQPSMLADLARFYRAEVAARGDQSQFSVWLTGGGLPAEWAKYLGRSFRCLLRR
TRDLKLRLQLATVATGFGDVIDACMNALDRVPDNVGPLVLRKGHGGAYLPLM
NT seq
9699 nt
NT seq
+upstream
nt +downstream
nt
atggatttgtcattggttgataagggacctgcagcggctgctgttctgcagctacagaga
tggggcccttctctcgcccacctaaacctttccgaatttcgccaagcttttatttctcca
acgagacagctattgttgctgctttcttaccactccgaagccttgtttattcctctactt
agcggggactctacaactggtagtagtaatctggagactggctctggtttctgctcacaa
ccattgacaccccctggcaagtcagattcaataggggatgattctgttctagattttgat
aatgatttcacttttgatagggaaattgcaagatccgaaaactacccttttgttggtgat
gttaactctttggcttggggtatctgtgaggataattatgatcagaacaaggatgctttg
tttagtgaaattttgtttgtatctggcaagcaaggtctggtggtacatgcttttgttgaa
tccacccgaaacactgatgttgacaggaatgcactgcatggtgagtatgtccaggggagg
tgggtggaatgggggccttctgcctccttagttgaaaatacggtggtggaggaagctacc
agcttgagtgttaatgccactggaaatattgatttaaacagagccaatggagacggtgaa
agtccccataacaaatgtaatgtgcctgggaacgatgagttgccaaaaggcgttgcttct
aagaaatggttgcaatcttttctgacaaaagttgaaactgttgaatacaatggtaacata
ttgaccaagttcccagaaaagtcattgtttccttgctctgcgaaagtcgtttcatttggt
ttgtttaatagtaatttaccatttctggacttcctttctaacagtgattcagtgtcaaat
gagtgcacccaggaaacaattcataagtcagagagtgataactctataaatacacatttg
acttcatctggtccgcatttcaaatctgaaattttgtctaatatttttggttttggaatg
aactgtttatacaagtgctccagagtgttttcaagcaattcacattgctttattggattt
gttttcacacaggttgatcctgtaactttgaatactagtgatgaaagtgaaattactaag
aaaaataatgtacttctggttgctagattagataggcggggaattcagtgtgtttcctca
gtgaagcttgacgagtgtccaattattggctcagtggtacaatggacagacttccagttt
tctgatagccttcttatttgtctaaatgcatctggcttagttgttttctatggagtaatg
tccggtgagtatgttgcacatttaggtatttcacagactttaggactcaaccctcagttg
gattttcataagcaaggagcattgtctctacgttctgagaagcacagtactgaatttgat
ggagttgatgacaaaagagttttgcaacatggtgattattctgataggagaatgtttaaa
aggttgattgctgcttcacatacctccctaatagctgttgttgatgattatggtgtaata
tatgtgatttcagctggtgactatataccgggcatgtattatgaaaatgagaaattactt
ccacatattcagcagcaaaggctaggcatgttgggtggttgggaggttggtggttgtgat
ataggtcaccaaagggtatattctaacatatctggttcacagaattctattgttcaatcc
atgacaaatgacagatcttctttcccggatgattgtggaagtaatgtgcttagaaaccaa
gagttggaccgtaagcaagaagggaagggatccagctcatttttgggtagattttctgct
tcaaaattaacagatcataagccttactactctgaaaataagccacacttgatgcgcaag
atctttcttcccccacataagtttagggaatatgatcctatctgtttctctccattagga
attactcggcttgttaagaaccggaatatgatgaacccgaagggttctcacattgttcat
ctcaatctgcacgctgagttcgtagtttgtgatgacaactttttgaatacacggtgtgaa
atgttttatctccaagggagggaagaagcctttattggagaggcagtgggctgcactttc
cagggatgtttttatttggtaacagaaagtggtctttcagtagtgcttccttctgtatca
gtctcatcaaattttcttcctcttgaagttattgggtgtgggcagttgaccaattcgggc
accggagataaagttaaaagcacaagggaaatgaaagaatctcaacagccttggtcaccc
tggaatgttgaaattttggacagagtccatttgtatgaaagtgctgaagaggcagatcgc
ttgtgtttggaaaacggatggaacctgaaagtatctcggatgcatcgacttcagttggca
ttggactacttgaaatttgatgagatagaacgatcattagaaatgcttgttggtgtcaat
ttggcagaagaaggagtattaaggttactctttgctgctgtgtatctgatgcttcataaa
gttggcaatgataatgaggtttctgctgcatcaaggcttcttgcgttagcaacttgcttt
gcaaccaaaatgattcgtaagtattggttggttgaacataagaaagatgcatatgaatat
gataggacccagatgctttcacttctgccagttttaccagaaaaggtacaagatgaagtg
gaaaattcaagaagactttgtgagatggctcaatttttggagataatacgaaacctgcaa
tctcgacttggttcaaaatataagagaccgggcagagaattggtggacagtggggaaaca
tcggcactactagacaatggtttatcacaggatgaatctcagttgatagttgtttctgta
gaccccgtatctttggagacatcagaacaacaagactttcctgtatctacatctgccttt
aactattctgagaatcttgcattgacacctgtggatcctgcagtgcatttggacccggag
gatttgagtgaagtatctcttgtgccacgaggggggttcttagagaagaaaattcttccc
ttggaaaatcccaaagagatgatagcacgctggaaaatagataatttagacctcaaggca
gtagtcaatgatgctttactcactggtcgtctccccttagcagttcttcaactccatctt
catcgttcaagagattcagttcctggaaaagagcctcatgatactttcactgaagtccgt
gatattggaagagctattgcttatgacctatttttgaagggtgaatctggacttgctgtg
gccacattgcaaaggcttggagaggatgtagaagctagcctcaagcagttattatttggt
acagtaagaagatatttacgagtgcaaatcactgaagagatgaatagatatggctacctg
ggcccatatgagtggaagatattggataggatatccctcattgagagactttaccctagc
agtagtttctggaaaacacttcacggacggcagaaagaattcattagaattccagcctgt
tcaagtttgcctaagagatattatttgcgcctgttgcattcacatgcattcaacaattct
accattgagtgcgatgacattgatggagttgtttttggttcatgggcaaatgtcaatgaa
aatccttctgttcgtatggttgatgaagatagtgcttatgctggatactgggcttgtgct
gctgtatggtttagtttctatgaccaaagaaccattgaacggatagtcttggatcagcca
tcttttatgggtgtgcatgtattgtgggaatcacagcttgagtaccatgtatgccacagt
gactgggagcaagtctctagactcctggaccttattccaccacaatttttagcagttgga
agcctccaagtcagcttggatgggttacagcctgtttcaaatgttggatgcagtagggga
tctgattatggtgcttacctgtgctctattgaagaattggatgctgtctgcctggatgtt
ccagaaatcaaagttttcaggttttcatgtaataatatgtcctccatatggttaaggatg
ctaatgcaagagaaacttgcgagaagctttattttcttaaaggaatattgggaaggcact
gctgatatattacttctgcttgcccgttctggcttcattactagcaagtatgaagtgcct
tccaaggatgataagattgagagtttatcagtccctcaatttccagatgaacgtggaaaa
tttcatgtcgggaccttgcaagccttgcataagctacttatacatcattgtgcgcagtat
aacttgccataccttctggacctttacctggaccagcatgagttgttacaagataataat
tcatatgcatcattacaggaagctgcgggagattgtgaatgggcaagatggttgctcctc
tctagggtaaaggggtgtgagtatgaagcatcattttctaatgctcgtgcgatcatgtca
cgcaatctagttcctggaagtaacctaagcgttccagagatggatgaaataattcgtacc
gttgatgacatttctgaaggaggggcagaattggcagctgtggcaaccttaatgtatgct
tctgtcccaattcaaagttgtctgagtagtggtagtgtaacgaggcatagcagcacatca
gcccagtgcacactagagaatcttaggcctactcttcagcgtttccctacattgtggcaa
tcatttgtatcagcatgttttgggcatgatcccatttccagtttttgggggcctaaggca
aataatgattatataaattggcgctgcaaaatatttttctcttctggatgtgatacatca
cttcgacaaattctgccatgctggtatcctaagcctctacggagactgattcagctttat
gtgcagggtcctcttggatggcaaacagtgtcgggtctgccaataggagaaggtttgtta
cacagagatgcagagtttttcataaacgctgatggggatactgagttcagcgcaatctcc
ttggaagctgccatccaaaaacacattcaggaggaactctataattctgcgcttgaggaa
aactcacttggcttggagcaccatttacatcgtggacgtgcactagcagcttttaatcat
ttacttactgcgagaattcaaaaactaaagtcagaaaggcaagcacatggacaaacaaat
gttcaagcagatgttcaaacacttcttggacctataaaagaaagtgaaaagtctcttctt
gcatctgttgtgccatttgcaattatgcattttgaggattctgtgttggtggcatcatgt
gctctcctcctggagctttgtggcttttctgccagcatgctccgcatagacattgcagcc
ttgagacggatatcttctttctacaaatcgaatgaaaatattgagagcttaaggcaactt
ccaaccaagagttctgaatttcatgcagttagccatgaaagtgatataacagtatctatc
gctcgagctctagcagatgaatatctgcaccaggatatttcaagaaatggtaagcaaaag
ggtactccaaatgtagctgctggtaaacaatcttcacgagctctcatgcttgttttacat
cacttggaaaaagctagccttcctcaaacggtggatgtaaagacatgtggttcttggctt
ttgagtggcaatggtgatggaatggagttaagatctaaacagaaagctgcaagccatcac
tggaatttagttacagttttttgtcagatgcatcaccttcccttgagtacaaaatacctt
tctgtattggcaagagacaacgattgggtcggatttttgtcggaagctcagattggagga
tatccttttgatacggtggtccaaatggcatcaaaggagtttagtgatccacgtctcaaa
attcatatttcaacagttttgaaaggcatgcagttaagaagaaaagctagctcctcctca
tatatagatactacagaaaagaatagtgaagtgccctttccagaagaaaacatttgtgtc
ccagtcgaactctttagaatattagcagaatgtgaaaagcagaaatttcctggagaggcc
attttgttgaaagcgaaggagttgtcctggtcaattttggcaatgattgcctcttgcttt
tcagatgtgtctccgatatcttgcctaacagtatggctggaaattactgctgcaagggaa
acttcttctattaaggtgaatgatattgcttccagaattgcaagaaatgttggagcagcc
gtagaagctactaattcccttccagcaggaagtaaaggcatgtgttttcattacaatagg
aaaaattcaaaacgaaggcggcttttggagcccatctcaagagatccctcagatgcttca
atttctaatatttcaaattctcttccgtgtgcaaatatatttgattccccgggccttatt
tctaaaggagaaagaaagatagaacttggggaaagtatgaatgtttccagtgattctgag
gaagggcctgctttgctgtccaagatggttgcagtgctttgtgagcaacacttgttcctg
cctttgttaagggcatttgaaatgttccttccgtcatgttctctcttacctttcatacgt
gctctccaggcattttcacaaatgcgcctatctgaagcctcagcgcacttgggttcattt
tctgcccgaattaaagaagaatcaacacgcctgccagtaaatgttggacgagaagcacag
attggtacatcatggatcagcttcaccgccattaaagctgcagattcaatgcttttgaca
tgtccatctccttacgaaaaaagatgcttactgcaactgcttgcttcaactgattttggt
gatggagggtccgcagcaatatactaccgacgtctttattggaaaattaatttagcagag
ccattattacgcaaggatgacactttacatcttgggagcgagactttagatgatgtttcc
cttgcaacgggactggagaataacaggcactgggagcaggcacggaactgggccagacag
ttggaggccagtggtgcaccttggaaatctgctgttcatcgtgtaactgaaaatcaggct
gaatcaatggtagctgaatggaaggagtttctttgggatgttccagaggagagaattgca
ttatggggccattgccaaacgttgttcatcagatactctttcccagcttcacaggctggg
ttatttttcctgaaacatgcagaagctttggaaaaagatcttccagctagagagcttcat
gagctgttgctgctttctctacaatggttaagcgggatgataaccctgtccagtccagct
tatccacttcatcttattcgagaaatcgagactaaagtgtggctcttggcagtagaatca
gaagcacacattaaggatgaaggagacttcaatttaagcagttctagccgtgacccaatt
atgaaaaatagctccagtattattgaccggactgcatgtctaataacaaaaatggacaat
catgttggtacatttaagaatagaacggttgagaaacatgatctaagagaaaataaccag
gcacataacaagaactatgtattagatactagctttccaatgaccacaggggggagtaca
aagactaagcggaggacaaaaggctacgggccgttaagacggccaccacttgatgcggta
gagaagcacactgatcttcatgatggttccaaccctcccaacgttagaagtgatttacaa
tctcaggacgaaaacataaaaatggaaatgtctttttcacgatgggaggaaggggtagga
ccagcagagccagaaagtgctgttctttccttattggaatttggacaaatagcagctgca
aagcaactccagcataagctatctccagataaaatcccatatgaatttgtagttgtggat
gctgcattgaaacttgcaggaatgtcttcaagtaagaaagtatccttatcaatgctagat
gaggaggtgcgttctgttatgcaatcgtacaacatactcaatgaacagcatcaagttgac
ccagtgcaggttttggagagtcttgcaaccaatctttctgaaggttgtgggcgtggaatt
tgcaagaagataatagcagtcaccaaagctgcaaccatcttaggcatttcattttccgag
gcatttgataagcagccaattgaattactacagctactttcccttaaagcacaggagtca
tttgaggaggcgcatctccttgtaagaactcattcaatgccagcggccagtattgctcaa
attcttgcagaatcctttctaaagggcttattggctgctcatcgtggagggtatatggat
tctcaaaaggaagaaggacctgctcctttattgtggagattttcagacttcttgaagtgg
gcagagctttgctcttctgagcaagaaattggacatgcattgatgcgtttggttattacc
ggacaagaagtaccacatgcctgtgaggttgagcttctaattttgtcccaccacttctac
aaattatcatcttgccttgatggagttgatgttcttgtagccctcgcagctactagggta
gaagcgtatgtctctgagggtgatttttcatgtttggcccgtctcataactggagtagga
aacttccatgccctcaatttcattcttggaattctgatagaaaatggtcaactggatctc
cttcttcagaagtattctgctgcagcagatgcaagttctggcactgctgaggctgttagg
gggtttcgaatggctgttctcacatcactcaagcatttcaatccaaatgaccttgatgcc
tttgctatggtctacaatcattttgacatgaaacatgaaacggctgctctcttagagtca
cgagcggagcagtcatctgagcagtggtatggccgttatgacaaggatcagaatgaagat
cttttagactctatgcggttttacattgaagctgctgaagttcacaaatccatcgatgct
ggcaacaaaacacgcgctgcatgcgctcaggcttcccttgtgtcccttcaaattcgaatg
cctgacttccagtggctgtaccgttcggaaaccaatgccaggcgggcccttgttgaacag
tctcgttttcaagaagccctcattgttgctgaagcctatggccttaatcagccaagtgag
tgggctttggtactttggaaccagatgctgaaaccggaagtaatggaagagtttgtggct
gaatttgtggccgttcttcctctccagccttcgatgcttgctgatctagcaagattttat
agggcagaggtggcagcgagaggggaccaatcccaattctcggtttggctaacgggggga
gggttgccagctgaatgggccaagtatctggggaggtcgtttagatgcttgttgagaagg
acgagagatttgaagctgcggttacaactggctactgtggctactggctttggggatgtc
atcgatgcatgcatgaacgcattagatagggttccggacaatgttggaccacttgtactc
aggaaaggtcatggtggcgcttatctcccgctaatgtga
DBGET
integrated database retrieval system
