Pyrus communis (pear): 137737741
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Entry
137737741 CDS
T10779
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pcox Pyrus communis (pear)
Pathway
pcox03040
Spliceosome
Brite
Enzymes [BR:
pcox01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137737741
Spliceosome [BR:
pcox03041
]
Complex C
Other components
Step II factors
137737741
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
HA2_N
HA2_C
AAA_22
AAA_19
AAA_16
AAA_30
nSTAND3
ABC_tran
ATPase_2
Sigma54_activ_2
MMR_HSR1
Helicase_RecD
NPHP3_N
SLFN-g3_helicase
T2SSE
AAA_29
DAP3
NB-ARC
Motif
Other DBs
NCBI-GeneID:
137737741
NCBI-ProteinID:
XP_068333394
LinkDB
All DBs
Position
6:23277941..23283430
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AA seq
700 aa
AA seq
DB search
MADLPILQFEDTIMKAVEENPVVVVIGETGSGKSTQLSQILHRRGYTKSGVVGVTQPRRV
AAVSVARRVSQELGVRLGDEVGYAIRFEDRTSERTRIKYLTDGVLLRESLSNPELDQYSV
IILDEAHERSLNTDILLGLMKRLVKRRASNFKVLITSATLDGEKVSQFFSNCPVVKVPGK
LFPVEIAYSRERPASYLESSLETALNIHIKQGEGDVLIFMTGQDEIDKLVLKLEERVRSL
EEGSCMDAIILPLHGSLQPEMQVRVFGPRPPNCRRFIVATNIAETSLTVDGVVYVIDSGY
VKQRQYNPSTGMYSLDVVQISKVQANQRAGRAGRTRPGKCYRLYPSSVYEDEFLDATIPE
IQRSSLAGSVLYLKSLDLPDIDILKFDFLDSPSSESLQDALKQLYLIDAIDENGLITRVG
KTMAELPLEPSLSRTLMEANEYGCLSQALTVAAMLSAETTLLPGRSKSTDKKRKHDYLDL
PDGSGWGDHIQLLQIYECWHQTDYDIDWCKDYQLQVRGMKFVKDVRKQLSQIMQKIAKGS
LDVQTSRRRNESQQDYHNLRKALCVGYANQLAERMMHHNGYRTLGFKPQVVQVHPSSVLK
PDDEGKLPDYVVYHELIATTRPFLRTVCAVNVAWVRPILDKVNNLNIKKLSGGIGRIEEQ
PEGNLSDLPKKEDVVAPVLDDRESRVQAARERFLARKGKK
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggcggacctaccaatcctccaattcgaggacacaatcatgaaagcagtagaagaaaac
cccgtcgtagtggtaatcggagagacaggttcgggaaagagcacgcagctctctcagata
cttcacagaaggggctacaccaagtccggagtcgtcggcgtcactcagccccgccgagtc
gccgccgtctccgtcgccagacgagtttcgcaggagctcggcgttcggcttggggacgaa
gttggatacgccatcagatttgaagatagaacttcggaaaggacgcggattaagtacctc
accgatggagttcttcttcgtgaaagcctctccaatccagagcttgatcagtactctgta
atcatactagatgaagctcacgaaaggagtctaaacacggacatactgctgggactgatg
aaacgcttggtgaaaaggcgtgcctcgaatttcaaggttctaatcacttcagcaactctt
gatggcgaaaaagtatcacaattcttttcaaattgccctgtagtgaaagtccccgggaag
ttattcccggtcgaaatagcctacagccgtgagcggcctgccagctatcttgagtcatct
ctagaaacagctctcaatatacatattaagcaaggcgaaggcgatgtcttgatattcatg
actggacaggatgagatagacaagttggtgttgaagttagaagagagagttcgaagcctg
gaagaagggtcttgcatggatgccataatccttcctcttcatggttctttgcagcctgaa
atgcaggtacgtgtttttggtcctcggcctccaaattgtaggagatttattgtcgcaaca
aatattgctgaaacttctttgactgttgatggtgttgtgtatgttattgattctggttac
gtaaagcaacgacagtacaacccgtcaactggcatgtattccctcgatgttgttcaaatt
agcaaggtacaagcaaatcaacgtgcaggacgagcaggaagaacacgtcctgggaagtgc
tatcgtttatacccttcatcggtttacgaggatgagttccttgatgcaacaattcctgaa
atacaacgctcttcgcttgctggaagtgttctttatttgaaatctttggacctccctgat
attgacattctaaaatttgattttcttgattctccttcctctgagtctttacaagatgct
ttgaagcagttgtatcttattgatgctattgatgaaaatggattgatcacaagagttgga
aaaacaatggctgagcttccgctagaaccttcactgtcaaggaccttaatggaggcaaat
gagtatggctgcttatcgcaggctttgactgttgctgctatgttatctgcagaaaccaca
ttgcttcctggtcgaagcaaaagtacggataagaagaggaaacatgattatttggacctt
cctgatggctctggttggggtgatcatatccagttgctacagatctatgaatgctggcat
caaactgactatgacattgattggtgcaaggattatcagttgcaggtgagagggatgaag
tttgtcaaggatgtaaggaaacagctatctcaaatcatgcagaaaatagcaaaaggatca
ttagatgtacagacaagcagaagacggaatgaaagccaacaagattatcacaatttgagg
aaggctttgtgcgtgggatatgcaaatcaacttgctgagagaatgatgcatcacaatggt
tatcgaactttaggttttaagccccaagtagtacaggtgcatccatcctctgtgctaaaa
ccagatgatgaagggaaattgcctgactatgttgtgtaccatgaactcattgcaacaacc
cgcccattcctgcgcactgtatgtgccgtaaatgttgcttgggtcagacccattttggac
aaagtaaataatctaaatatcaagaagctgagtggtgggattggtcgtattgaagagcaa
ccggagggaaatctttccgatttgccaaagaaagaggatgttgttgcgccggttctcgat
gatcgtgaaagtagagtacaggcggctagggaacgatttcttgctcgtaaaggaaagaaa
tga
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