Pyrus communis (pear): 137737776
Help
Entry
137737776 CDS
T10779
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pcox Pyrus communis (pear)
Pathway
pcox03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137737776
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcox03019
]
137737776
03012 Translation factors [BR:
pcox03012
]
137737776
Enzymes [BR:
pcox01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137737776
Messenger RNA biogenesis [BR:
pcox03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
137737776
Translation factors [BR:
pcox03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
137737776
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
Dicer_dimer
nSTAND3
AAA_19
ATPase
NACHT
T2SSE
Motif
Other DBs
NCBI-GeneID:
137737776
NCBI-ProteinID:
XP_068333428
LinkDB
All DBs
Position
6:28007493..28015554
Genome browser
AA seq
1210 aa
AA seq
DB search
MPSSFLLLLHPSPPSLQFPHASSPSPSHPKLIASSSKPSLLAMKDRPPSSYGSVYVPPHH
RLRSAITTPNYTSPTSVGSKLRDNQTAGALNQRSSTNGVLAYYQTQQQQFQKPKLQHSSA
YDDGVSEEGSDREAELLSHPTQNPYSSDNEWERKLTMLLCDKEKQELVTREKKDRCNFEK
IAALASRMGLYSHLYSKVAVFSKVPLPNYRFDLDDRRPQREVTLPLGLLRRVEGYLGEFL
SQKSRTKEDLSFSTSNSSGSIATDEGLFEQPESFASSKGVMEKLLWRRSMQLHDKQQAWQ
ESPEGRKMLELRRSLPAYREKDALLAAISRDQVVIISGETGCGKTTQIPQFILESEIEAV
RGAVCSIICTQPRRISAMSVSERVASERGEKLGDSVGYKVRLEGMKGRDTHLLFCTTGIL
LRRLLVDRNLKGISHVIVDEIHERGMNEDFLLIVLKDLLPLRPELRLILMSATLDSELFS
SYFGRAPIIHVPGFTYPVRTHFLEDVLEITGCKLTPYNQIDDYGQEKMWKMSKQAPRKRK
SQIASVVEDALKAADFKEYSPETRESLACWNPDSIGFYLIEYLLCNICESDKPGAILVFM
TGWDDINSLKEKLHANPLLGDPSQVLLLACHGSMASTEQRLIFDEPEDGVRKIVLATNIA
ETSITINDVVFVLDCGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQPGECYHL
YPRCVYDAFTEYQLPEILRTPLQSLCLQIKSLNLGSISEFLSRALQSPELLSVQNAIEYL
KITGALDEKENLTVLGRYLTMLPVEPKLGKMLLLGAIFNCLDPVLTIVSGLSVRDPFLTP
FDKKDLAEAAKSQFSRDNSDHLALVRAYEGWKVAERDFAGYDYCWKNFLSAQSMKAIDSL
RKEFFSLLRDTDLVDANTTTHNAWSYDEHLVRAVICYGLYPGICSVVHNEKSFSLKTMED
GQVLLYSNSVNARDSKIPYPWLVFNEKIKVNSVFLRDSTAVSDSVLLLFGGSFSKGDTDG
HLKMLGGYLEFFMKPAVAEMYQCLKGELDQLIQIKLLNPRMDTHSYHELLSAMRLLISED
QGEGRFVFGRQVLALSKSKPSVVAAQPALVSRTESGPGGDNSKSQLQTLLTRAGYNAPTY
KTMQLKNSQFRATVEFNGMQIMGHPCNNKKSAEKDAAAEAIQWLVSGTQMGHEDIKHMSM
MLKRSKKDHN
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atgccctcttctttcctcctcctcctccacccatctcctccgtctctgcaattccctcac
gcgtcgtcgccgtcgccttcacatcccaaactgattgcctcctcctccaaaccctcactc
ctggcgatgaaggatcggcctccttcctcgtacggctccgtctacgtccctccccaccac
cgcctccgctccgccattaccacccccaattacacctcccctacttcagtcggctccaag
ctccgcgacaaccagactgctggtgctctcaaccagaggagcagcaccaatggtgttctg
gcgtactaccagactcagcagcagcagtttcagaagcccaagcttcagcactcttccgct
tacgacgacggcgtttccgaggaaggctccgatcgcgaagctgagttgctgtcgcatccg
acacagaatccttactcatctgataatgagtgggaacggaaattaaccatgctgttatgt
gacaaggagaagcaagagttggttacaagggagaaaaaagatagatgcaactttgagaaa
atagctgctttggcaagcagaatggggctttatagccatctgtattcgaaagttgctgtg
tttagtaaggtcccactgccaaactacagatttgacctggatgataggcgccctcagaga
gaggtgaccttgcctcttgggttgctgaggagagttgagggatatcttggagagttcctt
tcccagaagtctaggacaaaggaagatctttccttttctacatcaaacagtagtggcagc
attgctactgacgaagggctttttgagcaaccagaatcatttgcgtcaagtaagggtgtg
atggaaaaacttctttggcggagaagtatgcagctgcatgataagcaacaagcttggcag
gaatctcccgaaggtagaaaaatgcttgaacttcgcagaagtcttccggcctatagagag
aaggatgcattattggcagcaatttcacgagatcaggttgttatcatatcaggtgaaact
ggctgtggcaagactactcaaattccacaattcattttagaatctgagatagaagctgtt
cgtggagctgtttgtagtattatatgtacacagcctagacgaatatctgctatgtctgtt
tctgaaagagttgcttcagagagaggggagaaattgggtgattcggttgggtataaggtt
cggttagaaggtatgaaggggagggacactcaccttctcttttgcaccactggcattttg
ttgagaagattactagttgatagaaatttgaaaggtatatctcatgtgattgtggatgaa
attcatgaacgtggaatgaatgaagattttctgcttattgttctcaaggatctccttcct
ctgcgaccagaacttaggctgattttgatgagtgcaaccctagattctgagcttttctca
tcctactttggtagagctccgataattcatgttccaggttttacatatccagttcgaact
cattttctggaggatgttctggaaattacgggatgcaaattaacgccatacaatcagatt
gatgattatggtcaagaaaagatgtggaaaatgagcaaacaggcgccaagaaagaggaaa
agccaaattgcttctgttgttgaggatgcacttaaagcagccgattttaaggagtatagt
ccggagactcgggagtctctagcatgttggaatcctgatagtatcggtttttatctcatc
gagtatctcttgtgcaatatctgtgagagtgacaagcctggtgccattctagtttttatg
actgggtgggatgacatcaattctctgaaggaaaagttacatgccaatcctctattaggt
gatccaagccaagtcttgttactagcatgccatggttctatggcaagtactgagcagagg
ttaatatttgatgagcctgaggatggagtgaggaagatagtgctggctactaatattgct
gagacaagcatcacgattaatgatgttgtttttgtacttgattgtggaaaggcaaaagag
acttcatatgacgcactgaataatactccttgtttgcttccttcctggatttccaaggtt
tctgcccaacaaagaagaggaagagcaggacgtgtccagcccggggaatgttatcatctc
tatcctagatgtgtgtatgacgcatttacagagtatcagttaccggagattttgaggaca
cctctgcagtctctctgtctgcaaataaaaagtttaaacctcggaagcatttctgagttc
ttatccagggctctgcagtcaccagagttactttcggtgcaaaacgccatagagtattta
aagatcactggggccttggatgagaaagagaatctgactgttttaggacgctatctaact
atgcttcctgtggagccaaaacttggaaagatgctcttgctaggcgccattttcaactgc
ctggatccagttttgactattgtttctgggcttagtgtcagagatccttttctaacacca
tttgacaagaaagaccttgctgaggctgcaaaatctcagttttcccgagataatagtgat
caccttgcacttgtgcgggcctatgagggctggaaggttgctgaaagagactttgctgga
tatgactattgctggaagaattttctttcagcacaatcaatgaaagctattgattccctt
aggaaggagttcttctctttgcttagggatactgatcttgttgatgccaacaccaccact
cataacgcatggagttatgatgagcatctcgtccgtgcagttatttgctatggcctgtat
cctggaatctgctctgttgtgcacaatgagaagtcattttcactgaaaacaatggaggat
gggcaggtgctgctatactcgaactctgtcaatgctagggattctaaaattccatatcca
tggctggttttcaatgagaagataaaggtgaactctgttttcctacgggattcaacagct
gtgtctgactcagtgctcctcctatttggtggaagtttttcgaaaggggataccgatgga
cacttgaaaatgctgggaggatatttggaattcttcatgaagcctgctgtagcagaaatg
tatcaatgcttaaaaggggaacttgaccagttaattcaaatcaaactactgaaccccagg
atggacacacacagttaccatgaacttctttctgcaatgcggttgctgatttcggaggat
caaggcgaaggtagatttgtgtttggccgccaggtccttgcactctcaaagtcaaagcca
tctgtggtggcagcacagccagccttagtttcaagaactgaaagtggacccgggggtgac
aattctaagagtcagctccagacattgctcacacgagcaggatacaacgcacctacctac
aaaactatgcaactgaagaacagccagttccgagctacagtggagtttaacggaatgcaa
attatgggccacccgtgtaacaacaagaagagtgcagaaaaagatgcggcagcggaggcc
attcagtggctggtgagtggaacacaaatgggccatgaggacatcaagcacatgtcaatg
atgttaaagagaagcaaaaaggaccacaattaa
DBGET
integrated database retrieval system
