Pyrus communis (pear): 137739118
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Entry
137739118 CDS
T10779
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pcox Pyrus communis (pear)
Pathway
pcox03013
Nucleocytoplasmic transport
pcox03015
mRNA surveillance pathway
pcox03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137739118
09122 Translation
03013 Nucleocytoplasmic transport
137739118
03015 mRNA surveillance pathway
137739118
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcox03019
]
137739118
03041 Spliceosome [BR:
pcox03041
]
137739118
Enzymes [BR:
pcox01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
137739118
Messenger RNA biogenesis [BR:
pcox03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
137739118
Spliceosome [BR:
pcox03041
]
Complex C
Other components
EJC/TREX
137739118
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
137739118
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
137739118
NCBI-ProteinID:
XP_068334713
LinkDB
All DBs
Position
7:complement(17519143..17525532)
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AA seq
432 aa
AA seq
DB search
MGDVRDNDGYEEELVDYEEEDQNAPNSVSAKPSGDTVKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVAALI
LCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRVLA
LARDKELGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEPEKNRKLTDLLDALDFNQVVIFVKSVS
RAAELNKLLADCNFPSICIHSGMPQEERLKRYKNFKEGLSRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQSRFEVDIKELPEQI
DTSTYSKISFFS
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgggtgatgtcagagacaacgatgggtacgaagaggagctcgtggactacgaagaggag
gaccagaacgcccccaactccgtttccgccaagccctctggtgataccgtcaaaaaggga
tatgttggcatccatagttcaggattcagagacttcctattgaagccggagcttcttcga
gcaattgtggattctggattcgaacatccttcagaagttcaacatgagtgcatccctcaa
gctatcttaggaatggatgttatttgtcaagcaaaatctgggatgggaaaaactgccgtc
tttgttctatcaacccttcagcaaatagatccagtacctggtcaggttgctgctcttatt
ctttgccacacgagagaattggcttaccagatttgtcatgaatttgagaggttcagtact
tatttgccagacctgaaggttgcagttttctatggaggagtcaatatcaaggttcacaaa
gatttgctaaaaaacgaatgtcctcacattgttgttggtacacctgggagagtattagct
ttggcaagagacaaagagcttggactgaagaatgtcagacattttattcttgatgaatgt
gataagatgcttgagtcacttgacatgagaagagatgtgcaggagatctttaagttgact
cctcatgacaagcaggtgatgatgttttcagcaacactaagcaaggaaatccgccctgtt
tgcaagaagtttatgcaagatcccatggaaatctatgtagatgatgaggccaaattgact
cttcatggtctcgtacagcactacatcaaattgagtgagcctgagaaaaaccgcaaattg
actgacctccttgatgcattggatttcaaccaagttgttatttttgtaaaaagtgtaagc
agagcagctgagctgaacaagctacttgctgattgtaacttcccctccatctgcattcac
tctggaatgccgcaggaagaaaggctaaaacgttacaagaatttcaaggaggggctttca
agaattcttgtggcaacggatttagtaggaaggggaattgacatcgagcgtgttaacatt
gttatcaattatgacatgcctgattctgctgacacctacttacacagggttggcagagct
ggtaggtttggtaccaagggcctagcaattacatttgtctcttccgcatctgattctgat
gttcttaatcaggtccagtcaaggtttgaggtggatataaaggagcttccggagcaaatt
gatacttctacttacagtaagatatcatttttttcataa
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