Pyrus communis (pear): 137739122
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Entry
137739122 CDS
T10779
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pcox Pyrus communis (pear)
Pathway
pcox03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137739122
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcox03019
]
137739122
03012 Translation factors [BR:
pcox03012
]
137739122
Enzymes [BR:
pcox01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137739122
Messenger RNA biogenesis [BR:
pcox03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
137739122
Translation factors [BR:
pcox03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
137739122
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
OB_NTP_bind
R3H
HA2_C
Ank_2
HA2_N
AAA_19
AAA_22
ResIII
ATPase
nSTAND3
AAA_23
Ank_5
NPHP3_N
Ank_3
Rad17
AAA_7
T2SSE
ABC_tran
Motif
Other DBs
NCBI-GeneID:
137739122
NCBI-ProteinID:
XP_068334717
LinkDB
All DBs
Position
7:8596775..8606818
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AA seq
1277 aa
AA seq
DB search
MARKKKHTKVDEPTKNRLLDALERFNASTDEVYTFEAGLSSFERAFVHEQCRRWCMKSKS
KGKGEHRCISVSKIRKKNTDVPSLSSLTFSEGTKEVLSDLFVRYPPGDEVEDLELSGKSS
DKNESAQRKRDKTFRKPLMNKEEIAKKVESLASKLKNNANLRKIFEDKSKLPIMSYKDVI
TSTVESHQVILISGETGCGKTTQVPQFILDHMWGKGEACKIVCTQPRRISATSVAERVSQ
ERGENVGEDIGYKIRLESKAGRHSSIVFCTNGILLRMLVSRGADRSKADASNKETEHNLA
DITHIIVDEIHERDRYADLMLAIIRDMLSSHPHLHLILMSATVDAERFSKYFGGCPIIRV
PGFTYPVKSFYLEDVLSILKSAERNHIDNTVVGLQTEDPDLTEEDKLALDEAIDLAWSND
EFDRLLELLSTEGTHKVFNYQHSLTGLTPLMVFAGKGRTAYVCMLLSFAADCHLQAKDGT
TALELAERENQREIAEILKEHIENSLSNSMKEQLLLDKYHQYFNPENIDVVLIEQLLKKI
CNDSKDGAILVFLPGWDDINKTRERLLMNPHFRDSSRFLIIALHSMVPSFEQKKVFKRPP
HGCRKIVLSTNMAETAITIDDVVYVIDTGRMKERNYDPYSNVSTLQSSWVSKANAKQREG
RAGRCQPGICYHLYSRLREASLPNFQEPEIKRMPIEELCLQVKLLDPECKIEEFLHKTLD
PPRAETIRNAVSVLQDIGALSLDEKLTDLGEKLGTLPVHPLTSRMLFFAILMNCLDPALT
LACASDYKDPFALPMLPDERTRAAAAKFELASLYGGLSDQLAVIAAFDCWKAAKERGEER
GFCSRYFVSSSTMHMLSGMRGQLQKELSRHGFIPEDVSRCSLNARNPGILRAVLVAGLYP
MVGRLLPPLKNGKRTFVETASGGKVQLHVHSINTKLSCKANPGERPLIVYDEVTRGDGGM
NIRNCTVVAPLPLLLLSSEIAVAPADDDDDNDEGSDVDYIEDGSDEDVMEIDRKSGGQHE
EKIMSSPDKSVKVIVDCWLHFGSKALDVAQVYCLRERLSTAILFKVTHPRKDLPPALGAS
VYAIACALSIDGLSGITLPVESVESPTSVLESQAYLQFLISGNSHDQHILRPHSKPTLNT
GHKLSKSLRPCEGHGTSLMSHNAHQTHQSALVSHGTHQTHLRPHERPPPQGTSILAANGA
VRSCTKGNKAANLSDPSSHNVGPPLHWASKTAHQKPPSEGTRLLAINGGAKVSEPLSQTV
GQPVKSTSRKKRRNGAG
NT seq
3834 nt
NT seq
+upstream
nt +downstream
nt
atggcgaggaagaagaaacatactaaagttgatgaacccacaaagaaccgattactagac
gcactcgagcggttcaacgcttcaactgatgaagtttacacattcgaggccggtctctcg
agcttcgaacgggcattcgtgcatgaacaatgcaggagatggtgtatgaaatcgaagagt
aaagggaaaggggaacaccggtgtatctctgtttccaaaattagaaagaagaacactgat
gtaccaagtctcagttccttgacattttccgaaggcacaaaagaagtattaagtgacttg
ttcgtacgttacccacctggtgatgaagtggaggacttagaattgtctgggaaaagtagc
gataagaatgagagtgcccagcggaagagggacaaaacgtttcgcaagcctttgatgaac
aaggaagaaattgcaaagaaagtggaatcacttgcttctaaattaaagaataatgctaac
ttgagaaagatttttgaagacaagtccaagcttccaatcatgtcctacaaggatgtcatt
acatcgacagttgaatctcaccaggtaattcttatatctggtgagactgggtgcggaaag
acaacacaggtcccacaatttattttggaccacatgtggggcaagggtgaggcatgtaaa
atagtgtgtactcaacctcgacgtatctcagccacttcagttgctgagagagtctctcag
gaaagaggagaaaatgtcggagaggatattggatacaagatacggttggaaagtaaagct
gggaggcactcatcaattgttttctgcacaaatggaattttattgaggatgctagtttcc
agaggtgctgatagatcaaaagcagatgcctcaaacaaagaaaccgagcataatcttgct
gacataactcacattatagtggatgaaattcatgaaagggatcgctacgctgatttgatg
ctagcaattatcagagacatgctttcttcacaccctcatctacatctgatattaatgagt
gcgactgttgatgccgaacgattttcaaaatattttggtggctgcccaattatccgtgtt
cctgggttcacctatcctgttaaaagtttctatttagaggatgtactttctatcctgaaa
tctgcagaacgtaatcacattgataacactgtagtaggtttacaaactgaagaccctgac
ttaaccgaggaagataagcttgctttagatgaagctattgatttggcttggtctaatgat
gagtttgatcgccttctagaattgctttctactgaaggaacacacaaagtctttaattac
cagcattctttaaccggacttacaccgttaatggtgtttgctggaaagggtagaactgca
tatgtttgcatgcttttatcttttgctgcagactgccatttacaggccaaggatggaaca
accgcattggagttggctgaacgggaaaaccagcgagaaattgctgagatattgaaagag
catatagaaaattctctttctaactcgatgaaagaacaactgttacttgataaatatcac
caatatttcaatcctgaaaatattgatgtggttcttatagagcaattattaaaaaaaatt
tgtaatgattcaaaagatggagccatccttgttttccttccagggtgggacgatataaat
aaaacccgggagagattacttatgaatccacatttcagagattcttcaaggtttctgata
atagctctacattcgatggttccatcttttgagcaaaagaaggtcttcaaacgcccccct
cacggttgccgtaaaattgttctttcaactaatatggctgaaactgccatcaccatagat
gatgttgtttatgttatagacactggtcggatgaaagaaagaaattatgatccttatagt
aatgtatcaactcttcaatcttcttgggtgtcaaaggcaaatgccaagcagcgagagggc
cgagcaggccgttgccagcctggaatctgttatcatctctattctagacttcgagaagct
tcattgccaaactttcaggagcctgagattaagagaatgccaattgaggagctctgtctt
caggtgaagttactcgacccagaatgcaagatagaagaattcttgcacaagacattggat
cccccacgtgcagagaccatacgcaatgcagtttctgttcttcaagatattggggcactg
tcgctcgatgagaaacttacagatcttggagagaagttaggcactctacctgttcatcca
ctgacaagcaggatgcttttctttgcaatactgatgaactgtctagacccagctttgact
ctggcatgtgcttctgactacaaggatccatttgccctgccaatgttacctgatgaaagg
acgagagctgctgctgctaaattcgaacttgcttcattgtatggtggccttagtgatcag
ctagcagtcattgcagcatttgactgctggaaggctgcaaaagaaaggggtgaagagaga
ggtttctgttctcgatactttgtgtcttcaagcacgatgcacatgctatctggtatgcgt
gggcagctccaaaaggagctaagtcggcatgggtttattcccgaggatgtatcaagatgt
agcttgaatgcacggaacccaggtatactccgtgctgttcttgtggccggtttgtatcca
atggtgggtagattgcttcctcctctcaagaatgggaaacgaacttttgtagagactgct
agtggtggtaaagttcaattgcacgtccactccattaacactaagttatcatgcaaggca
aatcctggggaacgtccattgattgtttatgatgaggtaactcgtggggatgggggtatg
aatatacggaactgcactgttgtcgcgccgcttccattattattgctttcatcagaaatt
gctgttgctccagccgatgatgatgatgacaatgacgaggggagtgatgtggattacata
gaggatggaagtgatgaagatgtaatggaaatagatcgtaagtcaggtggacaacacgag
gagaaaattatgtcgtctcctgataaatcagtcaaagttattgtcgattgttggcttcat
tttgggtccaaagctcttgatgttgctcaagtttactgcttgagagaacgcctatctaca
gcaatcttattcaaagttacgcatccaaggaaagatttgcctcctgctcttggggcctct
gtctatgctatcgcatgtgctctatctattgatggtctatctgggatcacattacctgtg
gaatctgtggagtcaccgacttctgtgctggagagtcaagcgtacttgcaatttcttatc
agcggtaactcacatgaccaacacatcctccgaccacactctaaaccaacacttaacaca
ggccataaactttctaaatctctgagaccatgtgaggggcatggaacatcacttatgagc
cataacgcacaccaaacacatcagtctgcacttgtgagccatgggacacaccaaacacac
ctcagaccacatgagaggcctccaccacaaggtactagtatacttgccgctaatggagca
gtgaggtcttgtacgaaaggaaacaaagcagccaacttgagtgacccttcaagtcacaac
gttggaccaccgcttcattgggcttccaagactgcacaccagaagcctccatcagaaggt
actaggttacttgccattaatggaggggcaaaggtgagtgagccattaagtcagactgtt
ggccaaccagttaagtcaacttcaaggaagaagcgtaggaatggcgccgggtaa
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integrated database retrieval system
