Pyrus communis (pear): 137739454
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Entry
137739454 CDS
T10779
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
pcox Pyrus communis (pear)
Pathway
pcox03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137739454
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcox03019
]
137739454
Messenger RNA biogenesis [BR:
pcox03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
137739454
mRNA degradation factors
5'-3' decay
Decapping complex
137739454
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
137739454
NCBI-ProteinID:
XP_068335126
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Position
7:complement(7967032..7972995)
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AA seq
804 aa
AA seq
DB search
MERSNGTDFRDVLESSSSENKLFDASQYEFFGQNVVDEVELGGLDYEEGRKPLFGPADNE
YHLFEKDEALGLGSLSDIDDLASTFAKLNKVVTGPRHPGVIGDRGSGSFSRESSSATDWA
QDGDFNNWLDQHMFDTEFSEEGKRWSSQPQPSSARFSESKQPKPLYRTSSYPDQQPVQHH
FSSEPIVPPKSAFTSFPPPGNKSPQGSPHQLNLSALVGGSQLPFSAPNLSPLSNSNLHMA
GLPHGLHYGGNMPQFANPSLPFNSRSQNHWVTHAGVLHGDHSSLRNNMLQQQLPHQNGLL
SPQLLSAQQQLQQQRLHHSVQPSLAHFAAMQSQFYGTHPSSSHKSMHGLSDISNHRPKRG
KHRFSQGSDTGSQKSESGWIQFRSKHMTSEEIESILKMQHAATHSNDPYIDDYYHQASLS
KKAAGSRSKHPFCPSHLREFPSRGRNSTDQHTHSSVDALGRIPLASIRRPRPLLEVDPPP
GSGDGEQVSEKPLEQEPMLAARIAIEDGLCLLLDVDDIDRLLQHGQPQDGGVQLRRRRQI
LLEGLAASLQLVDPLGKGSHSAGLAPKDDIVFLRLVSLPKGRKLLSKFIQLLFPGSELAR
IVCMTVFRHLRFLYGGLPSDPGAAETTSNLAKRVSTCVNGMDLRALSACLVAVVCSSEQP
PLRPLGSPAGDGATIILKSVLERATVLLSDPHAAGSCSISNRALWQASFDEFFGLLTKYC
LSKYETIVQSIFTQSQQSTEAIGSEATKAIHREMPVELLRASLPHTDERQRKLLSDFAHR
SMPISGLNGHGGNGGQMNSESVRG
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atggagagatctaatggcacagatttcagggacgtgcttgagagttcctcgtcagagaat
aaactctttgatgcatcacaatatgaatttttcggtcaaaatgtggtggacgaagttgag
ttggggggtttggactacgaggaaggcagaaaacctttgtttgggcctgctgataatgag
taccatttatttgagaaggacgaggctcttggtttgggatctttatctgacatagatgat
ctggcaagcacttttgcaaagttaaacaaagttgtaacaggaccaagacatccaggtgtt
attggagacagaggttcaggatccttttcaagagaaagttcatcagctactgattgggcc
caagacggagatttcaataactggttagatcagcatatgtttgatacagaattttccgag
gaaggaaagaggtggtcatcacagccgcaaccttcttctgctcgattttcagaatcaaaa
caaccaaaacctttgtacagaacatcgtcatacccagaccagcagccagtccagcatcac
ttctccagtgaaccaattgtaccgcccaagtcagcattcacatcattccctcctcctgga
aacaagtccccgcagggctcaccacatcagctgaatctttctgctcttgtgggtggttcc
cagttgcctttttctgcaccaaacctttctcctttatctaactctaatcttcatatggcc
ggtttacctcatgggttgcattatggagggaacatgcctcagtttgccaaccctagcctt
cctttcaatagcaggtcacagaatcattgggttacgcatgctggagtattgcatggcgat
cattccagcctcagaaacaatatgttgcagcaacagctccctcatcaaaatggactcctt
tccccacaattactgtcagctcagcagcagctacaacagcagagattgcaccattcggtt
cagccatctttggcccattttgctgcaatgcagtctcaattttatggtactcacccttct
tcatcacataagtcaatgcatgggttgtctgacataagtaatcatagaccgaaaagagga
aaacatcgtttttctcaaggctctgatactggtagtcagaaaagtgagagtgggtggatc
cagttcaggtctaagcacatgacatctgaagagatagagagtattcttaaaatgcagcat
gctgcaacacacagcaatgacccttatattgatgattattaccaccaggcaagtctttcc
aaaaaagcagctggctcacggtcgaaacatcctttttgcccatctcatcttagagagttc
ccttcccgcggccgtaatagtactgatcagcatactcatagttctgtcgacgctcttggg
agaattccccttgcttccatacgtaggcctcgccccctccttgaagttgaccctccccct
ggttctggcgatggcgagcaggtctctgagaagcctctggagcaggaacccatgcttgct
gctagaattgccattgaggatgggctttgtctccttcttgatgttgatgatattgatcga
ctgctacagcatggtcagccccaagatggtggggttcaactcaggcgaaggcggcaaata
ctgctggaggggttggctgcatcacttcagcttgtcgacccacttggtaaaggtagccac
tcagcggggctggctccaaaggatgacattgtgttcctacgtttagtttctcttcctaag
gggcgaaagctcctttctaagtttattcagcttctcttccctggtagcgagcttgcccgt
attgtgtgtatgacagtattccgtcatttaaggtttttgtatggtggcctaccttctgat
cctggagctgctgagacaactagtaatcttgcaaagagagtttctacatgcgtaaatggt
atggatcttcgtgcgttaagtgcttgtcttgttgcagtagtttgttcatcagagcagccg
ccgctccgaccccttggaagccctgctggagatggggccactattatcctaaaatctgtt
cttgaaagggcaactgtactcttaagcgaccctcacgctgctgggagctgtagcatttct
aaccgtgccctttggcaggcatcattcgatgaatttttcggtcttctcactaagtattgc
ctgagtaagtatgaaactatagtacagtcaatatttacgcagagtcagcaaagcacagaa
gctattggttcagaggccaccaaggcgatacatcgtgaaatgcctgtggagcttctgcgt
gctagtcttcctcacacagatgagcgtcaacggaagcttttgtcagattttgctcatcga
tcaatgcccatttctggtcttaatggccatggcgggaacggaggtcaaatgaactctgaa
tcagtgaggggatag
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