Pyrus communis (pear): 137741176
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Entry
137741176 CDS
T10779
Name
(RefSeq) THO complex subunit 2
KO
K12879
THO complex subunit 2
Organism
pcox Pyrus communis (pear)
Pathway
pcox03013
Nucleocytoplasmic transport
pcox03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137741176
09122 Translation
03013 Nucleocytoplasmic transport
137741176
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcox03019
]
137741176
03041 Spliceosome [BR:
pcox03041
]
137741176
Messenger RNA biogenesis [BR:
pcox03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
137741176
Spliceosome [BR:
pcox03041
]
Complex C
Other components
EJC/TREX
137741176
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
137741176
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
137741176
NCBI-ProteinID:
XP_068337085
LinkDB
All DBs
Position
7:complement(25778879..25798252)
Genome browser
AA seq
1870 aa
AA seq
DB search
MSLPPVERAYVTDDCLRQWKNGNPSFKLPDPVPMLRFLYELCSTMVCGELPLHKCKAALD
SVEFSDEVSDQDLPSCFVDIITQLSQDIRMPGEDRARLVKLAKWLVESSLVPLRLFQERC
EEEFLWEAEMIKIKAQELKSKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCQNSETS
SHNAAATIGIIKSLIGHFDLDPNHVFDIVLECFELQPDSDVFLELIPIFPKSHASQVLGF
KFQYYQRLEVNSPVPFGLYKLTALLVKEDFIDLDSIYAHLLPKDNEAFEHYSAFSSKRLD
EANKIGKINLAATGKDLMDDEKQGDVTIDFFAALDMETGAVCERSAECENNQTLGLLTGF
LSVDDWYHAHLLFERLSPLHPVEHIQICDSLFRLIEKSISSAYDTVRRAHLPIFGASSGT
SIDVMNTENASIHGSFIELPKELFQMLACSGPYLYRNTLLLQKVCRVLRGYYSSALQLVN
SGEGVIDPNHVFGGNPRLHLKEARSRIEEALGTCLLPSLQLVPANPAVGQEIWEVMNLLP
YEARYRLYGEWEKEDEQIPMVLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANPM
TVLRTIVHQIEAYRDMIAPVVDAFKYLTQLEYDVLEYVVIERLAQGGRDKLKDDGLNLSD
WLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGQGIELVLLEELIQQMANVHYTENLT
DDQLDAMAGSETLRYQATSFGVTRNNKALIKSTNRLRDSLLPKDESKLAIPLLILLAQHR
SVVIIEANAPYIKMVSEQFDRCHGTLLQFVEFLCSAVTPASAYAQLIPSLDDLVHKYHLD
PEVAFLIYRPVMRLFKCQGSSDVFWPLDNIDTQSITSASSESEATEHSGNVVLDLGSPWK
PITWSDLLSTAERMLPSKSWNSLSPDLYTTFWGLTLYDLYVPRNCYEAEIAKQHAALKAL
EEISDNSSSAITKRKKEKERIQESLDRLTSELRKHEENVASVRKRLSREKDKWLSSCPDT
LKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQPMIC
CCTEYEVGRLGKFLCETLRIAYYWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQFIK
VHWKWSQRITKLLIQCLESTEYMEIRNALIMLTKISSVFPVTRKTGINLEKRVSKIKGDE
REDLKVLATGVCASLAAKKPSWVSDEEFGNGHLDLKNGQNGSKSSAGNSIAAQGEPMGGR
VGAVPSQHSDSTNSGKDLTLKRKLVDGRLERGESSPTAKSDQGHVKLKASSSVNGSDAKP
SITSAAFQPATARSIENKKQVNEFSNKASDENMGKAAPKNSTESELRAQAKRSVPTGSLA
KPLKQDVAKDDIRSGKAIGRTSSMSDRDIPSHASAGTSNVSSSATVNGNTDSASAKGSAS
FARTDIHGTESKVEVAAAKSSNTRISAPKEDGGENSDAPRPHSSRLVHSPRHDNSAAASK
SSDKLQKRTSPEETDRQSKRRKGITEVRDFEGEARVSDRERSVDARLLDPENSGTDHQSV
HKATDKPSDRSKDKGNERHEKDYRERLERPEKSRGDDLNERSRDRSMERHGRERSVEKLQ
ERGMDRNLDRLPDKSKDDRGKVRYNDVSAEKSHVDDRYHGQSLPPPPPLPPHMLPHSVSS
AKRDEDEDRRFGTTRHTQRLSPRHDEKDRRRSEDNSLISQDDSKRRREDDFRERKREDRE
GLSIKVEEREREREREREKATLLKEDTDATAASKRRKLKREHLPSGEAGEYSPVPPPPPL
SISLSQSYDGRDRGDRKGPIVQRSGYLEEPSPRIHGKEVPSKMARRDTDPMYEWEDEKRQ
RAEQKRRHRK
NT seq
5613 nt
NT seq
+upstream
nt +downstream
nt
atgtctctcccgcccgtagagcgtgcgtacgtcacagatgattgccttcgtcaatggaag
aatggaaaccctagtttcaagctcccggaccctgttccgatgcttcgatttctctacgag
ctctgttccaccatggtatgtggggaactgccgcttcacaagtgtaaagcggccttggat
tcggttgagttctccgacgaggtttcggaccaagacttgccttcctgttttgtggatatc
atcacccaattgtctcaagatattagaatgcctggagaggatcgtgctcgtctagtaaaa
ttggccaaatggctggtggaatcttccttagttccgttgagacttttccaggagcgctgt
gaggaagaatttttgtgggaggctgaaatgatcaagataaaggctcaggaattgaagagt
aaagaggtcagagtaaatacccgtcttctatatcagcaaacaaaatttaaccttctccga
gaagagagcgagggctatgccaagctggttactcttctttgccaaaactcagaaacttca
tcacacaatgcagcagcaacaataggaattataaagtcattaattgggcattttgatctg
gacccaaatcatgttttcgatattgttttggagtgctttgaacttcaaccagatagtgat
gtctttttggagctgataccaatttttccaaagtctcatgcttcacaagtccttggtttc
aaatttcaatactatcagcgtttggaagtaaatagtccagtaccatttggactttataag
ctaacagctttgctggtgaaagaggactttattgatcttgatagcatatatgctcatcta
cttcccaaggacaatgaggcatttgagcattatagtgctttctcttccaagcgacttgat
gaggctaataaaattggtaaaataaatcttgctgcaaccgggaaggatctgatggatgat
gagaaacaaggagatgtgacaatagatttttttgccgctttagacatggaaacaggtgca
gtttgtgagcggtctgcagagtgtgaaaataatcaaactttgggcttgcttactggtttt
ctttccgtagatgactggtaccatgcacatctactatttgagcggctctcacctctccat
cctgttgaacatattcaaatctgcgacagcttgtttaggctcattgaaaaatcaatctct
tctgcttatgacactgttcgtcgagcacatcttccaatatttggggcttcctcaggaact
agtattgatgtgatgaatacagaaaatgcatcaatccatggatcatttatagaacttcca
aaagaactttttcagatgcttgcttgttctggaccatatctttatcgtaatactttgttg
ctgcagaaggtatgtagagtattgagaggttattactcgtctgcgcttcagcttgtaaac
agtggtgaaggagtcatagatcccaatcatgtttttggaggtaatcctcgtctgcatctt
aaggaagcaaggtcaaggatagaggaagctttgggaacatgtctacttccttctttacaa
ttggtacctgcaaatccagctgttggacaggagatctgggaagtgatgaatctacttccc
tatgaggcgcggtatcgtttatatggtgagtgggagaaagaagatgagcagattcctatg
gttttagctgcaagacaaacagccaagttggacacaagaagaattttgaaacggcttgca
aaagaaaatttgaagcagctgggtcggatggttgcaaaattagctcacgcaaatccaatg
actgtactaagaacaattgttcatcagattgaggcgtacagagatatgattgctcctgtt
gtagatgcatttaagtatttgactcagctggagtatgacgttttggaatatgttgtcatt
gagcgtctggctcaaggaggtcgtgacaagctaaaagatgatggacttaatttgtcagac
tggcttcaatctttggcttcattttggggtcacttgtgtaagaaatacccatctatggaa
ttgagggggcttttccagtatcttgtgaaccaactaaaaaagggccaaggaattgaactg
gttctcctcgaggagcttattcagcaaatggcaaatgtccattacactgagaatctgact
gatgatcaactggatgccatggcaggcagtgagacgctgcgttatcaggcaacttctttc
ggtgttactcgtaataacaaggcactaatcaagtccaccaacaggctaagagactcactg
ctaccaaaggatgaatccaagttggcaatcccccttctaatacttcttgctcagcatcgt
tctgtggtcataatagaggcaaatgcaccttacatcaagatggttagtgaacagtttgat
agatgtcatggaaccctccttcaatttgtggaatttctttgcagtgctgtgacaccggca
tcggcttatgctcagctaattccttcgcttgatgatcttgttcacaaataccatcttgat
ccagaggttgctttcttaatttatcgtcctgtaatgaggcttttcaagtgccaagggagt
tctgatgtcttctggcctctagacaatattgacactcaaagtatcacgtctgcaagttca
gagtctgaagctacagagcattctggaaatgtggttctggatcttgggtctccatggaag
cctataacgtggtcggatcttcttagtactgctgaaaggatgctgccttcaaaatcctgg
aatagcctgtcacctgatctctatactacattttgggggctcacgctctatgatctttat
gtccctagaaattgttatgaggctgaaattgcaaagcagcatgctgctcttaaagctctg
gaagagatttctgataattcaagttcagcaataaccaaacggaagaaagaaaaagaaaga
attcaagaatccctagatcgcctgactagcgaactccgtaagcatgaagaaaacgtcgca
tccgttcgtaaacgcttatctcgggagaaggacaaatggttgagttcttgccctgatact
ttgaagatcaacatggagttccttcagcgttgtatatttccacgctgtactttcagtatg
ccagatgctgtgtattgtgccatgtttgtgcacactcttcattcccttgggacaccattt
tttaacacagtcaaccacattgatgttctcatctgtaaaaccttgcagcctatgatatgc
tgctgtactgaatatgaagtaggtagacttgggaagtttctctgtgagacgttgaggatt
gcttactattggaagagcgatgaatctatttatgaacgcgaatgtggaaacatgccaggc
tttgctgtatattatagatatccaaatagccagagagttacttatggccagttcatcaag
gttcactggaaatggagtcaaaggattacaaagttattgattcaatgtctggaatcaacc
gagtacatggaaattcgaaatgcactcataatgttgacaaaaatatctagtgtttttcca
gttactcgaaaaactgggattaatcttgaaaaacgggtttccaagataaagggtgacgag
agagaggacctcaaggtgctggcaacaggtgtctgtgcctctcttgctgctaaaaagcct
tcatgggtttcagatgaggaatttggtaacggacatcttgatttaaagaatggacaaaat
gggtcaaagtcttctgctggtaattcaatagctgcacagggtgaacctatgggaggaaga
gttggagctgtaccctcccaacactcggattcaacgaactcaggcaaagacctgactcta
aaaagaaaacttgtagatgggaggttggaaagaggtgaaagtagcccaactgcaaaatct
gatcaagggcatgtaaaacttaaagctagctcatcggtgaatgggtcagatgcgaagcca
tcaataacctcagctgctttccaacctgcaacggcaagatctattgaaaataaaaaacaa
gtgaatgaattctcgaataaagcctcagatgaaaacatgggaaaagctgcaccaaagaac
tctacagaatctgagttgagagctcaagcaaaacggtcagttcctactggatcacttgct
aagccgctgaaacaagatgttgcaaaagatgatattagatctggaaaagcaattggcaga
acttctagtatgagtgacagagatattccgtcccatgcatcagctgggacttcaaatgtt
tcctcttccgccacagtaaatggtaacacagattcagcgtcagctaaaggttcagcttca
tttgcgaggactgacattcatggtactgaatcaaaggtggaggttgcagctgcaaaatct
tcgaatacaaggatttctgctccgaaggaagatggtggtgaaaattctgatgcaccaagg
ccccattcttctcgacttgtccactctcctaggcatgataattctgctgctgcttcaaaa
tctagtgataagctgcaaaagagaaccagtcctgaagaaactgacagacagagcaaacgg
cggaaagggataactgaagtgagagattttgagggcgaagctcgagtgtcagaccgagag
aggtctgttgatgctcgactgttggatcctgaaaactcaggtactgatcatcaaagtgtt
cacaaggccactgataagccttctgaccggtccaaagataagggcaatgaaagacatgaa
aaggattatagggaaagattggagcgtcctgaaaagtcgcgtggagatgatttgaatgag
agatccagggacaggtcaatggagagacatggaagggagcgttcagtagagaaacttcag
gagaggggtatggataggaatttggatagacttcctgacaaatctaaggatgacagaggt
aaagtaaggtacaatgatgtatcagcggaaaaatctcatgttgatgatcgatatcatgga
caaagcttacctccaccaccacccttacctcctcacatgcttccacattctgttagttct
gctaaaagagatgaagatgaagatagaaggtttggaactacaaggcatactcagaggctt
tccccgaggcatgatgagaaggaccgtagacgatctgaagataattccttaatttctcaa
gatgattcaaaacgtagaagagaagatgattttcgagaaagaaagcgcgaagatcgtgag
gggctgtcaataaaggtagaggagcgggaacgggagagggagagagagagggagaaagca
accctcttgaaggaggatacagatgcaactgcggcttctaagaggcggaaacttaaaaga
gagcatctgccttccggtgaagcaggtgagtattcaccagttccccctccacctcctctt
tcaattagtttgtcccagtcatacgatggaagggataggggagaccgaaaaggacccatt
gtccagcggtcaggttacttggaggaaccaagtccgaggattcatggtaaagaagtaccc
agcaaaatggctcgtcgtgacactgacccgatgtatgaatgggaggatgagaaaaggcaa
agagctgaacaaaagcgaaggcatcggaagtga
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