Pyrus communis (pear): 137741502
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Entry
137741502 CDS
T10779
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pcox Pyrus communis (pear)
Pathway
pcox03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137741502
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcox03041
]
137741502
03009 Ribosome biogenesis [BR:
pcox03009
]
137741502
Enzymes [BR:
pcox01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
137741502
Spliceosome [BR:
pcox03041
]
Complex A
U1 snRNP components
U1 related factors
137741502
Complex B
137741502
Ribosome biogenesis [BR:
pcox03009
]
Eukaryotic type
Pre-60S particles
Helicases
137741502
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SH3_4
DUF7081
Motif
Other DBs
NCBI-GeneID:
137741502
NCBI-ProteinID:
XP_068337306
LinkDB
All DBs
Position
8:25296782..25325839
Genome browser
AA seq
648 aa
AA seq
DB search
MVYTGYGHFSPMYLPYPNTEKHAHCALEEIRKVKFAQGTAAEVKQSRRQWRKIAAEGGTP
DTQDHHKMDITTDGTSYTPEDVEEYRLRRGIRVVGWDDIPNPIRAFDDTGFPENVIQEFS
KAGFVRPTPIQAQVWPMDLEDHDLIGIAKPGSGKMLAYLIPAILYVNSQPKRSRGGDGPI
VLILTPTIQRAEQIQQEGARFAAAYNIKVLSGLHLLKHENSGQTCGGGILIDTLSSLLVL
LKSKSTNLKSVTYLVLDGADWILSDTHESQIRNILSEIRSDCQKSFWSTGWPEEVDKRAK
LFLHNACKVQIVSPDLKVTPPVDQIVYVLTEDQKYNKLVALLYGISDGSRVVIFMDTKKG
RESHDQIALQLCTAGLPAASFHENKSQAERIGIASEFQAGKVPIMIATDVAARILDLKDV
KYVINYDFPGSLDDYVYHIDRFGSAAAEGTAYTFFTTANAGCAKELTILLKKAGQYVSSE
LEQLGRDVTYPGTYIPRTWRWKANNKMTGYGHFSPMYLPFPSTEKHARYALEEIRKIKGL
QAHFVRVVEAYEFSTLCIFVSMTYLTFEAADPATYEKKLYQAIVVKASGKKDLMLFGMVN
SDGRLSKMHDIREGVEYPIYSIWREDDEDDEDDEVEEDDDEDDEDDDE
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atggtatatactggatatggtcatttttctccaatgtatctgccttaccccaatactgaa
aaacatgcacattgcgccctggaggaaatcaggaaagtaaagtttgctcaaggcaccgcc
gccgaggtcaagcagtccaggaggcagtggaggaaaattgctgctgaaggcggcacgcct
gatacgcaggaccaccacaagatggatattactactgatggcacctcttatacgcccgaa
gacgtcgaggagtatcggctacggaggggaatccgtgttgtaggctgggatgatattcca
aaccccatcagggccttcgatgacactgggtttccggaaaatgttatacaagaattttca
aaagctggatttgtcagacctacaccaattcaagctcaagtatggccaatggatttggag
gaccatgacctcattggtattgctaaaccaggatccgggaagatgctagcgtatctgatc
cctgcaattctctatgtaaactcccagccaaaacgatctcgtggtggagatggcccaata
gtattgattttgactcccacaattcaacgcgctgaacaaatccaacaggagggtgctaga
tttgctgcagcttacaacattaaagtcttatcgggcttgcacctgctaaagcatgaaaat
tctggtcagacttgtggaggtgggattttaatcgacacacttagtagcttgcttgttttg
ttaaagagcaaaagtacgaacttgaaaagcgtcacataccttgtgttggatggtgctgat
tggatcctatcagacacgcatgagtctcaaatacgaaatatattatctgagattcgctca
gactgtcaaaaatcattctggagtactggctggccagaagaggttgataaacgggcaaag
ctattccttcacaacgcttgcaaagttcaaatagtttctccagatctgaaagtgacacct
ccggttgaccaaattgtttacgtccttactgaagatcagaaatataacaagttggtcgcg
ctgctatatggtatatcggatggcagcagagtagtgatattcatggatacaaagaaagga
cgtgaatcacacgatcagatcgccctgcagctttgcacggcgggcctgcccgcagcctcg
tttcatgaaaacaaaagtcaagctgaaaggatcggtattgcctctgagtttcaagccggg
aaggtccctataatgattgcaacagatgtagctgctcgtattctagatctgaaggatgtg
aaatatgttatcaattacgactttccaggatcccttgatgattatgtttaccacattgac
cgttttggaagtgctgcagcagaaggaacagcatacacattctttacaactgctaatgct
ggatgcgcaaaggaacttaccatcttactcaagaaagctggacagtatgttagttctgaa
ttggaacaactggggcgtgatgtaacatatccaggaacctacatacctcggacgtggcgc
tggaaggctaacaacaaaatgactggatatggtcatttctctcctatgtatctgcctttc
cccagtactgaaaaacatgcacgttacgccctggaggaaatcaggaaaataaaggggctc
caagcgcattttgtgagagtggtggaggcatacgaattctccaccttgtgtatttttgtt
agcatgacttatctaacttttgaggccgctgaccccgcgacttacgaaaagaagctttac
caagcaatagttgttaaggcgagtggcaaaaaggatttgatgttgtttggtatggtcaat
tctgatggccgtttgtcaaaaatgcatgacatcagagagggagtcgaatatccaatctat
agtatctggcgagaagacgatgaggacgatgaggacgatgaagtagaggaagatgacgat
gaagacgatgaagacgatgatgaatga
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