KEGG   Pyrus communis (pear): 137741946
Entry
137741946         CDS       T10779                                 
Name
(RefSeq) THO complex subunit 3 isoform X1
  KO
K12880  THO complex subunit 3
Organism
pcox  Pyrus communis (pear)
Pathway
pcox03013  Nucleocytoplasmic transport
pcox03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pcox00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    137741946
  09122 Translation
   03013 Nucleocytoplasmic transport
    137741946
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pcox03019]
    137741946
   03041 Spliceosome [BR:pcox03041]
    137741946
Messenger RNA biogenesis [BR:pcox03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     137741946
Spliceosome [BR:pcox03041]
 Complex C
  Other components
   EJC/TREX
    137741946
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    137741946
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 Beta-prop_IFT122_1st WD40_Prp19 WD40 WD40_CDC20-Fz Beta-prop_WDR3_1st WD40_WDHD1_1st Beta-prop_EML_2 EIF3I ANAPC4_WD40 Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd WDR55 WD40_Gbeta Beta-prop_TEP1_2nd Beta-prop_WDR3_2nd Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_Aladin Beta-prop_NOL10_N Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_Vps41 DSE1_N Beta-prop_EML Beta-prop_WDR35_TULP_N eIF2A WD40_RFWD3 Beta-prop_WDR75_1st Beta-prop_HPS5 Beta-prop_IFT140_1st Tricorn_2nd NBCH_WD40 Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_DCAF12 WDR90_beta-prop_4th TP_0598_N Beta-prop_IFT80_2nd Beta-prop_WDR41 PAC11 Beta-prop_ELP1_1st B-prop_COPA_B_2nd TRM82_WD CFAP251_N Beta-prop_IFT122_2nd DUF7099 Beta-prop_Nup120_160 WD_LRWD1 PROPPIN PD40
Other DBs
NCBI-GeneID: 137741946
NCBI-ProteinID: XP_068337750
LinkDB
Position
8:24995992..24999325
AA seq 318 aa
MAETEEPAIPFKNLSSREYQGHKKKVHSVAWNCTGTKLASGSVDQTARVWHVEPHGHGKA
KDIELKGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCAQLAELSGENINITYK
PDGTHIAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWSTTSEIFFLTTGNGTVEVLA
YPSLKPVDTLMAHTAGCYCIAIDPLGRYFAVGSADSLVSLWDISEMLCVKTFPKLESPVR
TISFNHTGEYLASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKSNLLAYAGDDKN
KYQTDEGVFRIFGFKSAT
NT seq 957 nt   +upstreamnt  +downstreamnt
atggcagaaacggaggaacccgcaataccctttaagaatctcagtagcagagagtaccag
ggccacaagaagaaagtgcattctgtggcttggaactgcacggggacgaagcttgcgtcg
ggttctgttgatcaaactgctagggtttggcacgttgagccccatggacatggtaaggct
aaagatattgaattgaaggggcacacagatagtgtggatcagctgtgttgggaccccaag
catgctgatttaattgccactgcctctggggacaagacggttcgtctttgggatgctcgg
agtggaaaatgtgcacagctagcagaacttagtggggagaacattaacatcacctataaa
cctgatgggacgcacatcgccgttggtaatagggatgatgaactaacaattttggatgtt
cggaaatttaagccaattcacaagcgaaagttcaattatgaggttaatgaaattgcttgg
agcacaacaagtgaaattttcttcttgacgactggaaacggtacggttgaagtactagca
tacccatctcttaaaccagtcgacaccctcatggctcatacagctgggtgttattgcatt
gccattgacccacttggaagatattttgctgttgggagtgctgattccttggtgagcctg
tgggatatatcagagatgctctgtgtgaaaacatttccaaaacttgaatcgcctgtgagg
acaataagcttcaaccacactggagagtatcttgcgtctgccagtgaagacttattcatt
gatatatcaaatgtgcaaaccggccggacagtgcatcaaattccatgtagggctgccatg
aacagcgttgagtggaatcccaaatccaatctacttgcatatgctggagatgacaagaac
aaataccaaactgatgaaggtgtttttaggatatttggcttcaaaagtgcaacctaa

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