Pyrus communis (pear): 137742038
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Entry
137742038 CDS
T10779
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
pcox Pyrus communis (pear)
Pathway
pcox03018
RNA degradation
Brite
Messenger RNA biogenesis [BR:
pcox03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
137742038
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
137742038
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
137742038
NCBI-ProteinID:
XP_068337872
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Position
8:20039659..20046841
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AA seq
664 aa
AA seq
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MSGLLNSSLNGSASNLPDSSGRFASSFSGQSGAASPVFHHSGSMQGLHNIHGSFNVPNMP
GTLTSRNSTINNVPSGGVQQPAGSLSGGRFTSNNLPVALSQLSHGSSHAHSGVTNRGGIS
VVGNPGFSSSTNGIGGSIPGILPTSAAIGNRSAVSGLGVSPILGNAGPRITSSMGNMVGG
GNIGRSISTGGGLSVPGLASRLNLSGNSGSGSLTVQGQNRLMSGVLPQGSPQVISMLGNS
YPNAGGPLSQSHVQVNNLSSMGIMNDVNSNDSSPFDINDFPSLTSRPSSAGGPQGQLGSL
RKQGLGVSPIVQQNQEFSIQNEDFPALPGFKAGGDAEYGINMHQKEQLHDNAVSMMQSQH
FPMGRSSGFNLGGTYSSHRPQQQQHAPSVSSSGVSFSQVNNQDLLHMHGSDIFPSSHSTY
HSQTSGGPPGIGLRPLNSANSVSGMGSYDQLIQQYQQQNQSQFRLHQMSAGNQSFRDQGM
KSMQSAQSAPDLFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWS
DEPAKGDPEFSVPQCYYAKQPPALHKGYFSKFSVETLFYIFYSMPKDEAQLYAANELNNR
GWFYHKEHRLWFIRVPNMEPLVKTNTFERGSYHCFDPNTFETIRKDNFLVHYELLEKRPV
LPQH
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggtttacttaattcttctctaaacggatcagcctcaaatctcccagacagtagt
gggcgatttgcgtcatctttctctggtcaatctggtgcagcttctcctgtttttcatcac
tcaggaagtatgcagggattgcataatattcatgggagcttcaatgttcccaacatgcca
ggtacattaacatcaagaaactcaacaataaataatgttccttctggtggagtccaacaa
ccagctggaagcctctctggcggacgattcacatcaaataaccttcctgttgctttgtct
cagttatctcatggaagctcccatgcacattcaggagtcactaatagaggaggtataagt
gtagtaggaaaccctggatttagtagtagcacaaatggaattggcggttctattcctggg
attctccctacatctgctgcaattggtaaccggagtgctgtttcaggattgggcgtgtcc
ccaattttgggaaatgcaggtcctcggattacaagttccatgggaaacatggttggtggg
ggaaacattgggaggagtattagcactggtggaggcttgtcggtgcctggtcttgcttct
cgtctgaatttaagcggaaatagtggatctggaagtttaactgtacaagggcaaaatcgc
ttgatgagtggcgtgctaccacaagggtctccgcaagtaatttcgatgctaggaaattct
taccctaatgctggtggtccactttctcaaagccatgtccaagtgaataatttgagctcg
atgggaataatgaatgatgtgaattctaatgacagttctccttttgacatcaatgatttc
ccttcattaacaagtcgtcctagttctgcgggagggcctcaggggcagttgggttcacta
cgaaaacaaggccttggtgttagtcctattgttcaacagaaccaagagttcagtatccaa
aatgaggactttccagctttaccaggatttaaagcaggtggtgatgctgaatatgggatc
aatatgcaccagaaagaacaactccatgacaatgctgtgtcgatgatgcaatctcagcac
ttcccaatgggacggtcttcaggatttaacttggggggaacttattcttctcataggcca
caacagcaacaacatgctccatcagtcagcagtagtggtgtctcgttttcacaagtaaac
aatcaggatcttctccatatgcatggttcagacatattcccatcatcacattcaacatat
cattcacagactagtggaggacctcctggcattggattaagacctctgaattctgccaat
tcagtttctggtatgggttcatatgaccagcttattcagcagtatcaacaacaaaatcaa
tcccagtttcgcctgcaccagatgtcagctggcaatcaatcatttagggatcagggaatg
aaatcgatgcagtcagcgcaatctgctccagacctatttggtttgcttggattgttaagt
gtcataaggatgagtgatcctgatcttacatcccttgcacttggaattgatttgacaaca
cttggattaaacttgaattcaacagaaaaccttcacaagacttttggttccccgtggtct
gacgagccagctaagggtgatccagagtttagtgttccccaatgttactatgctaaacaa
ccgcctgcactacataaagggtatttttcaaagttttccgtggaaacgttgttctatatc
ttttacagcatgcccaaagacgaggcccaattatatgctgccaatgaactcaataataga
ggctggttttatcacaaggaacaccgcctatggttcataagagtacccaacatggagcca
cttgtgaagaccaacacgtttgagagaggatcttatcactgctttgatcccaataccttt
gaaactatccgaaaggataattttcttgtgcattacgagttgttggagaagagaccggtg
ttaccacagcattga
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