Pyrus communis (pear): 137742067
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Entry
137742067 CDS
T10779
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pcox Pyrus communis (pear)
Pathway
pcox03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137742067
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcox03041
]
137742067
03009 Ribosome biogenesis [BR:
pcox03009
]
137742067
Enzymes [BR:
pcox01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
137742067
Spliceosome [BR:
pcox03041
]
Complex A
U1 snRNP components
U1 related factors
137742067
Complex B
137742067
Ribosome biogenesis [BR:
pcox03009
]
Eukaryotic type
Pre-60S particles
Helicases
137742067
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
Dicty_REP
DUF3439
Motif
Other DBs
NCBI-GeneID:
137742067
NCBI-ProteinID:
XP_068337914
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All DBs
Position
8:24454439..24459772
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AA seq
574 aa
AA seq
DB search
MSYVPPHLRSSSRTTTTTTTTTTTTTAKPSSRTLDDQSKLSSSNSHINNDKSSGAASFSS
FSHSNASSRWSSGALSQASRARPDSVVPQWKPSDRVLGMKPEMIEEVCLRLNLDVSVSPD
SASAPAPIESFTDMCLHPSIMKDIDNHGYTTPTSIQAQAMPVALSGRDLLGCAETGSGKT
AAFAIPMIQHCLAQPPVQRGDGPLALVLAPTRELAQQIEKEVKAFSASLESFRTAIVVGG
TNISEQRSELRAGVDVVVATPGRFIDHLQQRNTSLTRISFVVLDEADRMLDMGFEPQIRE
VMRNLSEKHQTLLFSATMPEEIEELAQEYLTKPVQVKVGKVSSPTANVTQTLEKVPESEK
TDRLLALLVEEASRVEGTGHPFPLTIVFVERKTRCDEVAEALVAQGLHAVALHGGRTQTE
REAALRDFRKGTTSILVATDVASRGLDVSGVAHVINLDLPKSMEDYVHRIGRTGRAGSMG
QSTSFYTDRDMFLVANIKKAISDAGSGNAVAFATGKTARRKEKEAAAAQKQARVALSNSS
TAGPASVNIEDKYRFMFADSNNKKEGAADSAWDD
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtgcctccgcacctgaggtcgagctcacgaaccaccacaaccaccacaacc
accaccaccaccaccaccgccaaaccctcgtcccgaaccctagacgatcagagcaagctc
tcctcctcaaactctcacatcaacaacgataagtcgtccggtgctgcttccttctccagc
ttctcgcactccaatgcctcctcccgctggagctccggcgctctctcccaggccagcaga
gctcgccctgactccgtcgtccctcagtggaagccctccgaccgcgtccttggcatgaag
cctgaaatgattgaagaggtttgtttgcggcttaatttggatgtttctgttagtcccgac
tctgcttctgctccggcaccgattgagtctttcacagatatgtgtttgcaccctagcatc
atgaaggatatcgacaatcatggatacactacaccaacatccattcaggctcaagctatg
ccagttgccctcagtgggagggacctattaggctgtgctgaaactggcagtgggaaaact
gctgcatttgccattcccatgatacagcattgcttggctcaacctcctgttcagcgtggt
gatggaccactagctctggtattggctccgactagagagcttgcccaacaaattgaaaaa
gaggtcaaagcttttagtgcatctctcgagtccttcagaactgcaattgtggtcggtgga
accaacatttctgagcagaggtctgagctacgagcaggagttgatgtagtggttgccact
cctggaagatttatagatcatttacaacaaaggaacacttctctcactagaatttctttt
gttgttctagatgaagctgatagaatgcttgacatgggatttgaaccgcagataagagag
gtgatgcggaacctttctgaaaagcatcaaactttgctgttcagtgcaactatgcctgaa
gagatagaagaattagctcaggaatacttaactaaacctgtgcaagtgaaggtaggaaaa
gtgagtagccctacagcaaacgtaactcagactttggagaaggttcctgagagtgagaag
actgatcggcttttggctttgctcgtagaggaggcatctcgggttgaaggaactggccat
ccctttcccttaactattgtatttgttgaaaggaagacgagatgtgacgaagttgctgaa
gctttggtagcacaagggttgcatgcagttgctcttcacggtggtcgtactcaaactgaa
cgagaggctgctctacgtgattttagaaaaggcactaccagtattttggtcgccactgat
gttgcatctcgcggtttggatgtctcaggagttgcacatgttatcaatttggatcttcca
aagagcatggaagattatgtgcaccggattggaagaacaggaagagcaggatcaatggga
caatctacttccttttacactgatcgtgacatgttcctcgtggcaaatataaagaaagca
atatcagatgctggatctgggaatgctgtggcttttgcaactgggaagactgcaagaagg
aaagagaaagaagcagcagctgctcaaaagcaagctagggttgccttatccaatagctca
acagcgggaccagcatcagtaaacattgaggataagtatcggttcatgtttgctgattcg
aacaataaaaaagaaggtgcagcagatagtgcttgggacgattga
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