Pyrus communis (pear): 137745084
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Entry
137745084 CDS
T10779
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
pcox Pyrus communis (pear)
Pathway
pcox03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137745084
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcox03019
]
137745084
Messenger RNA biogenesis [BR:
pcox03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
137745084
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
137745084
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
CR_prot_dom_plant
Motif
Other DBs
NCBI-GeneID:
137745084
NCBI-ProteinID:
XP_068341059
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All DBs
Position
9:complement(24452676..24453833)
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AA seq
282 aa
AA seq
DB search
MSSSGPPPPKPPPPRDILIRSVWSDNLESEFELIRSVIDDYPLISMDTEFPGVVVRPDSN
DPNFYHREPAAHYLMLKANVDRLNLIQVGLTLSDDSGNLPDLGTKNLYIWEFNFRDFDVA
RDAHAHDSVELLRRQGIDFERNRDFGVDSVRFAELMMSSGLVCNDAVNWVTFHSAYDFGY
LVKLLTQQVLPDELSVFLNYVRVFFGSGVYDVKHLTRFCAALYGGLDRVCQTLNVGRIAG
KSHQAGSDSLLTLHAFQRIREVYFPKDGIVKYAGVLYGLEVS
NT seq
849 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcatccggcccccctccacccaagcctccgccgccgcgagacatcctgatccgc
tcggtgtggtccgataacctcgagtccgagttcgaactgatccgatccgtcatcgacgat
taccctttgatttccatggataccgaattcccgggcgtcgtggtccgacccgactccaac
gatcccaatttctaccaccgcgagcccgccgcgcactacctcatgctcaaggccaacgtc
gatcgcctcaatctgatccaggtcggcctcaccctctcggacgacagcggaaatctaccg
gatttggggaccaagaatctgtatatatgggaattcaatttccgggacttcgacgtcgcg
cgggacgcccacgcgcacgactcggtcgagttgcttcgccgccaggggatcgatttcgag
cggaaccgggatttcggggtggactcggtccggttcgcggagctgatgatgtcgtcgggg
ctcgtctgcaacgacgccgttaactgggtcacgttccacagcgcctacgatttcgggtac
ctggtcaagttgttgactcagcaagtcttgccggacgagttgtcggtgttcttgaattac
gtgagggttttctttgggtctggagtgtacgacgtgaagcacctgacgaggttctgcgcc
gccctctatggtgggctggaccgggtctgccagacactgaatgtgggccggattgccggt
aagagccaccaggcagggtcggatagcctgctaaccctgcacgcgttccagaggatcaga
gaggtctattttccgaaggacgggatcgtgaagtacgccggcgttttgtatggtctagag
gtttcttga
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