Pyrus communis (pear): 137747798
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Entry
137747798 CDS
T10779
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3 isoform X1
KO
K14829
pre-rRNA-processing protein IPI3
Organism
pcox Pyrus communis (pear)
Brite
KEGG Orthology (KO) [BR:
pcox00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pcox03009
]
137747798
Ribosome biogenesis [BR:
pcox03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
137747798
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
EIF3I
Beta-prop_EML
Beta-prop_TEP1_2nd
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
WDR90_beta-prop_4th
Beta-prop_HPS5
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_IFT122_1st
Beta-prop_VPS8
Beta-prop_IP5PC_F
Beta-prop_RIG_2nd
Beta-prop_SPT8
Beta-prop_WDR19_1st
WDR54
Beta-prop_BBS7
Beta-prop_SCAP
Beta-prop_WDR75_2nd
PALB2_WD40
PROPPIN
PQQ_2
HTH_20
VPS8_N
LZ3wCH
DUF465
Motif
Other DBs
NCBI-GeneID:
137747798
NCBI-ProteinID:
XP_068344048
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Position
1:4802820..4806203
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AA seq
476 aa
AA seq
DB search
MYPYSVLDSKTLNKNPRENPQFTNPIHSNPSVLSMELVVASSSVEAGIGCWDLRTGAEQL
RYKLCASPPHGLICVAERFLASSQLREPSASSGSVQYWSWSKPQVDVKSFPEEPINPLAA
NSEGTYIVGGGSSGNIYLWEVNTGRLLKKWHAHYRGVSCLAFSDDGSLLISGSEDGGIRV
WSLIGLFDDYQSQQESHLYMHNFTEHTLCVTDVVTGYGGCKAIIVSASQDRTCKVWSVGS
GRLLRNIVFPTIIDAIALDPGENVFFAGGRDGKIYVAALNAESPLNSKFGLHIIDCFSNH
SKAVTCLAYGITGNYLLSGSEDGVVRVWDARTHNIVRVFKHAKGPVNNILVVRQHFSQMN
SYASSRRHGSSLPPPLEKYTTEEGGDIRAFLGGPATCSNLTEPLYITEQVMNRQIKELQQ
QGSASAEMEIERLKRENERATQMAQQWRKMYDNLHRFCVNELLDGDQGGVSNGNAA
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgtatccttactctgtcctagattccaaaacactcaataaaaaccctcgtgagaacccc
caattcaccaatccaatccattcgaatccatctgtactctcaatggagctggtggtggcc
tcgtcgtctgtcgaagccggcatcggctgttgggacctccgcaccggcgccgagcagctc
cgctacaagctctgcgcttctccgcctcatggcctcatttgcgtcgccgaacgattcctc
gcctcctctcagctccgtgagccttctgcctcctctggctctgtacagtactggtcttgg
tccaagccgcaggttgatgtgaagagcttcccagaagaaccgatcaatccgctcgctgcg
aacagcgaagggacgtacattgttggcggtggctcatcggggaatatctacttgtgggag
gttaatactggtagactgcttaagaaatggcatgctcactacagaggtgttagttgcttg
gcattttcggatgatggctccctgctgatttcggggtcggaggatggaggcattagagtt
tggtctcttataggattattcgatgattatcaaagtcaacaggaaagccatctgtacatg
cataattttacggagcacactctttgtgtaacggatgttgtcacaggatatggtggatgc
aaagccattatcgtgtcagcatcacaggatcgcacatgtaaggtttggagtgtaggaagt
gggagattattgagaaatattgttttccctactataattgatgcaattgcactggatcct
ggtgaaaatgtcttctttgccggtggtagagatggcaagatatacgttgctgcacttaat
gctgagagcccacttaacagcaagtttgggttgcatatcatcgattgtttctcgaatcac
agcaaagctgttacttgcctagcatatggcattactggaaattatttgctttctggatca
gaagatggcgtcgttcgagtttgggatgctagaactcataacattgttcgtgtattcaaa
catgcaaaaggtccagtgaataatattctagtcgttcgacagcatttttctcagatgaat
tcgtatgcgtcctcgagaaggcatggttcatcattaccacctccactggaaaagtataca
acagaggaaggcggagacattagagctttccttggaggcccggctacttgcagtaatttg
acagaaccattgtacatcactgaacaagtgatgaataggcaaatcaaagagcttcagcaa
caaggatctgcctcagcagaaatggagattgagagactgaagcgcgaaaatgaaagagcc
acacaaatggctcagcagtggagaaaaatgtatgacaacttgcatcggttctgtgtaaat
gagcttttggatggcgatcaaggaggagtctcaaatggaaatgcagcttga
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