Pseudomonas chlororaphis subsp. aurantiaca: JM49_00830
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Entry
JM49_00830 CDS
T03338
Name
(GenBank) type VI secretion protein
KO
K11900
type VI secretion system protein ImpC
Organism
pcp
Pseudomonas chlororaphis subsp. aurantiaca
Pathway
pcp02025
Biofilm formation - Pseudomonas aeruginosa
Brite
KEGG Orthology (KO) [BR:
pcp00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
JM49_00830
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
pcp02044
]
JM49_00830
Secretion system [BR:
pcp02044
]
Type VI secretion system
Imp/Vas secretion system core components
JM49_00830
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
VipB
VipB_2
SurA_N_3
VMAP-M0
Motif
Other DBs
NCBI-ProteinID:
AIS10256
UniProt:
A0AAJ0ZMM8
LinkDB
All DBs
Position
180586..182061
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AA seq
491 aa
AA seq
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MSTSAAQQKSNENGEYSILDSIIAETRLTPDDEAYDIAKRGVSAFIEELLKPQNDGEPVK
KAMVDRMIAEIDAKLSRQMDEILHHEDFQSLESAWRGLQLLVDRTNFRENIKIEILNVSK
QDLLDDFEDSPEVMQSGLYKHIYTAEYGQFGGQPVGAIIANYFMSPSSPDVKLMQYVSSV
ACMSHAPFIAAAGPKFFGLESFTGLPDLKDLKDHFEGPQFAKWQSFRQSEDSRYIGLTVP
RFLLRNPYDPEENPVKSFVYKETVANSHEHYLWGNTAYAFGTKLTDSFAKFRWCPNIIGP
QSGGAVEDLPLHHFESMGEIETKIPTEVLVSDRREYELAEEGFISLTMRKGSDNAAFFSA
SSVQKPKFFGISAEGKAAELNYKLGTQLPYMMIVNRLAHYLKVLQREQLGSWKERTDLEL
ELNKWIRQYVADQENPSAEVRGRRPLRAAQIIVSDVEGEPGWYRVSLNVRPHFKYMGADF
TLSLVGKLDKE
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgagcactagtgcagcacaacagaaaagcaacgagaacggcgagtacagcattctcgac
agcatcatcgccgaaacccgcctgactccggacgacgaagcctacgacatcgccaagcgc
ggtgtgtcggccttcatcgaagagctgctcaagcctcagaacgacggcgagccggtcaag
aaggccatggttgaccgcatgatcgccgagatcgatgccaagctcagccgccagatggac
gaaatccttcaccacgaagacttccagtccctggaatcggcctggcgtggcctgcagttg
ctggtcgaccgcaccaacttccgcgaaaacatcaagatcgaaatcctcaacgtctccaag
caggacctgctggacgacttcgaagattcgccggaagtgatgcagtctggcctgtacaag
cacatctacaccgctgaatacggccagttcggtggccagccggtgggcgcgatcatcgcc
aactacttcatgtcgccaagctcgccagacgtgaagctgatgcagtacgtgtccagcgtt
gcctgcatgtcccacgcgccgttcatcgccgcggccggtccgaagttcttcggcctggaa
agcttcaccggcctgccggacctgaaggatctgaaagaccacttcgaaggcccgcaattc
gccaaatggcagagcttccgccagtcggaagactcgcgctacatcggcctgaccgtaccg
cgcttcctgctgcgcaacccgtacgatccggaagagaacccggtcaaatccttcgtctac
aaggaaaccgttgccaacagccacgagcactacctgtggggcaacaccgcgtacgccttc
ggtaccaagctgaccgacagcttcgccaagttccgctggtgcccgaacatcatcggcccg
cagagcggtggcgcggtagaagacctgccgctgcaccacttcgaaagcatgggcgaaatc
gaaaccaagattcctacagaggtcctggtttccgaccgccgtgaatacgaactggccgag
gaaggcttcatctccctgaccatgcgcaaaggcagcgacaacgcggcgttcttctccgcc
agctcggtgcagaagccgaagttcttcggcatcagcgccgaaggcaaggctgcggagctg
aactacaagctcggcacccagttgccgtacatgatgatcgtcaaccgcctggctcactac
ctgaaagtgctgcagcgcgagcaactcggttcgtggaaagaacgtaccgacctcgagctg
gaactcaacaagtggatccgccagtacgtcgccgaccaggaaaacccgagcgccgaagtc
cgtggccgccgtccgctgcgtgccgcgcagatcatcgtcagcgatgtggaaggtgagccg
ggctggtaccgcgtcagcctgaacgtgcgcccgcacttcaagtacatgggtgccgatttc
accctgtcgctggttggcaagctggacaaagagtaa
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