Pseudomonas chlororaphis subsp. aurantiaca: JM49_01020
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Entry
JM49_01020 CDS
T03338
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
pcp
Pseudomonas chlororaphis subsp. aurantiaca
Pathway
pcp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pcp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JM49_01020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcp03400
]
JM49_01020
Enzymes [BR:
pcp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
JM49_01020
DNA repair and recombination proteins [BR:
pcp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
JM49_01020
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
CbiK
Motif
Other DBs
NCBI-ProteinID:
AIS10293
UniProt:
A0AAJ0ZMK5
LinkDB
All DBs
Position
complement(226117..226896)
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AA seq
259 aa
AA seq
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MRIISVNVNGIQAAVERGLLSWLQAQNADVICLQDTRASAFELDDPAFQLDGYFLYACDA
EVPAQGGVALYSRLQPKAVISGLGFETADRYGRYLQADFDKVSIATLLLPSGQNGDEDLN
QKFKLMDDFARYLDKQRRKRREYIYCGSLYVAQQKLDIKNWRDSQQSPGFLAPERAWMDE
IVGNMGYVDALREVSREGDQYSWWPDNEQAEMLNLGWRFDYQLLTPGLRRFVRSARLPRQ
PRFSQHAPLIVDYDWTLTI
NT seq
780 nt
NT seq
+upstream
nt +downstream
nt
atgcggatcatcagtgtgaacgtcaatggtattcaggctgcagtggagcgaggtttgctc
agttggctgcaagcacagaatgccgacgtcatctgcctgcaggacacccgcgcctccgcc
tttgaactggacgatccagccttccaactggatggctacttcctttatgcctgcgatgcc
gaagttcccgcccaaggcggtgtggctttgtactcgcggttgcaaccgaaggctgtcatc
agcggtctcggcttcgagacagccgaccgctacgggcgctacctgcaagccgatttcgac
aaggtcagcatcgcgaccttgctgcttccttccgggcagaacggcgatgaagacttgaac
cagaagttcaagcttatggacgacttcgcccgttacctggataaacagcggcgcaaacgt
cgcgagtacatttattgtggctcgctgtacgtggcgcaacagaagctggatatcaagaac
tggcgtgacagccagcaatctccgggcttcctggcgcctgagcgtgcctggatggacgag
attgtcggcaacatgggttatgtcgatgccctgcgcgaagtcagccgcgaaggcgatcaa
tacagctggtggccagacaacgagcaggccgagatgctcaacctgggctggcgcttcgac
tatcagttgctgaccccgggcctgcgtcgcttcgtgcgcagcgcacgcctgccacgccag
ccgcgcttctcccagcacgcgccgctgatcgtggactacgactggacgctgaccatctaa
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