Pseudomonas chlororaphis subsp. aurantiaca: JM49_01980
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Entry
JM49_01980 CDS
T03338
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pcp
Pseudomonas chlororaphis subsp. aurantiaca
Pathway
pcp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pcp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JM49_01980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcp03400
]
JM49_01980
Enzymes [BR:
pcp01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
JM49_01980
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
JM49_01980
DNA repair and recombination proteins [BR:
pcp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
JM49_01980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AIS10479
LinkDB
All DBs
Position
430119..430931
Genome browser
AA seq
270 aa
AA seq
DB search
MPELPEVETTRRGIAPHLEGQRVSRVIVRDRRLRWPIPEDLDVRLSGQQIVKVERRAKYL
LINAEVGTLISHLGMSGNLRLVEVGLPAAKHEHVDIELESGLALRYTDPRRFGAMLWSLD
PLNHELLIRLGPEPLTDLFDGERLYQLSRGRSMAVKPFIMDNAVVVGVGNIYATEALFAA
GIDPRREAKGISRARYLKLAIEIKRILAAAIERGGTTLRDFIGGDGQPGYFQQELFVYGR
GGEHCKVCGTGLREIKLGQRASVFCPKCQS
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattaccggaagtcgaaaccacccggcgcggtatcgcgccgcacctggaaggg
cagcgcgtcagccgcgtgatcgtgcgcgaccggcgtctgcgctggccgattccggaggac
ctcgatgtgcgcctgtccggccagcagatcgtcaaggtcgagcgccgcgccaagtacctg
ttgatcaatgccgaagtcggcaccctgatcagtcacttgggcatgtcgggcaacctgcgc
ctggtggaagtcggcctgccggcggccaagcacgagcacgtcgacatcgagctggagtcc
ggcctggccctgcgctacaccgacccgcggcgctttggcgcgatgctctggagcctcgac
ccgctcaatcacgagttgctgatccgcctggggccggagccgctgaccgacctgttcgac
ggcgagcgcctgtatcagctgtcgcgcggacgttcgatggcggtcaagccgttcatcatg
gacaacgcggtggtggtgggggtgggcaatatctacgcgaccgaagcgctgttcgccgcc
ggcatcgacccgcgtcgcgaagccaaggggatttcccgggcgcgctatttgaagctggcg
atcgagatcaagcgcatcctggccgcggccatcgagcgcggcggcaccaccctgcgcgac
tttatcggcggcgacgggcagccgggctatttccagcaggaactgttcgtctacgggcgt
ggcggggaacactgcaaggtctgtggcacggggctgcgcgagatcaagctggggcagcgt
gcgagcgtgttctgccctaaatgccagagctga
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