Pseudomonas chlororaphis subsp. aurantiaca: JM49_02850
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Entry
JM49_02850 CDS
T03338
Name
(GenBank) RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pcp
Pseudomonas chlororaphis subsp. aurantiaca
Pathway
pcp02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pcp00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
JM49_02850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcp03021
]
JM49_02850
Transcription machinery [BR:
pcp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JM49_02850
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_23
Rv2175c_wHTH
HTH_17
HTH_24
Sigma70_ECF
Sigma70_r3
MerR
HTH_29
FaeA
HTH_31
Motif
Other DBs
NCBI-ProteinID:
AIS10647
LinkDB
All DBs
Position
complement(625136..625654)
Genome browser
AA seq
172 aa
AA seq
DB search
MSSAQSPHSDLVGALYRDHRGWLLAWLRRNVACPQRAEDLSQDTFVRLLGRDELKAPREP
RAFLVAIAKGLLFDYFRRAALEQAYLTELMLIPEEEQPSPEEQQSILEDLRAIDRLLGKL
SSKARAAFLYNRLDGLGHAEIAERLGVSVPRVRQYLAQGIRQCYVALYGEPL
NT seq
519 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgtcagcccaaagcccccacagtgacctcgttggcgcgttgtatcgcgaccatcgc
ggctggctgctggcctggctgcgacgcaacgtggcctgcccgcaacgggccgaggacctg
agccaggacaccttcgtccgcctgctgggccgcgacgaactgaaagccccgcgcgagccg
cgggcgttcctggtggccatcgccaagggcctgctgttcgactacttccgccgcgccgcg
ctggaacaggcctacctcaccgaactgatgctgatcccggaagaggaacaaccctccccg
gaagaacagcaatcgatcctcgaagacctcagggccatcgaccgcctgctgggcaagctg
tcgagcaaggcccgcgcggccttcctctataaccgcctcgatggcctcggccatgccgaa
atcgccgaacgcctcggcgtgtccgtgccgcgggtcaggcagtacctggcccagggcatt
cgccagtgctacgtcgccctgtacggtgagccgctatga
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