Pseudomonas chlororaphis subsp. aurantiaca: JM49_03060
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Entry
JM49_03060 CDS
T03338
Name
(GenBank) RNA polymerase subunit sigma-70
KO
K03086
RNA polymerase primary sigma factor
Organism
pcp
Pseudomonas chlororaphis subsp. aurantiaca
Pathway
pcp02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pcp00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
JM49_03060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcp03021
]
JM49_03060
Transcription machinery [BR:
pcp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JM49_03060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
AIS10687
UniProt:
A0AAJ1E322
LinkDB
All DBs
Position
complement(676841..678688)
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AA seq
615 aa
AA seq
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MSGKAQQQSRLKELISRGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFES
APDADALLLAEADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMGAIAHFPGTVEHILSEYTRVTTEGGRLSDVLSGYIDPDDGIAPPAAE
VPPPVDAKAAKADDDTDDDDAEASDDEEEAESGPDPVIAAQRFGAVADQMEITRKALKKH
GREHKQALAEMLALAELFMPIKLVPKQFEGLVERVRSALDRLRQQERAIMQLCVRDARMP
RADFLRQFPGNEVDESWSDALAKGKAKYAEAIGRLQPDIIRCQQKLTALETETGLTIAEI
KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK
FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP
TPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVE
SLKEATREVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL
RHPTRSEHLRSFLDE
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcagtctcgcctcaaagagttgatcagccgtggtcgtgag
cagggttacctgacttacgcggaggtcaacgaccacctgccggaggatatttcagatccg
gaacaggtggaagacatcatccgcatgatcaacgacatggggatcaacgtattcgagagt
gctccggatgcggatgcccttttgttggccgaagccgataccgacgaagcagcagctgaa
gaagccgccgcagcgttggcggctgtggaaaccgacattggtcgcactaccgaccccgtg
cgtatgtacatgcgcgaaatgggtacggtagagctgctcacacgtgaaggcgaaatcgaa
atcgccaagcgtatcgaagagggcatccgtgaagtgatgggcgcgatcgcgcacttccct
ggcacggttgagcacatcctctccgaatacactcgcgtcaccaccgaaggtggccgcctg
tccgacgtcctgagcggttacatcgacccggacgacggtattgcgccgcctgccgccgaa
gtaccaccgcctgtcgatgccaaggccgcaaaagcggacgacgacaccgacgacgatgac
gccgaagccagtgacgacgaagaagaagccgaaagcggtccggatccggtcatcgcagcc
cagcgctttggcgccgttgccgaccagatggaaattacccgcaaggcgctgaaaaagcac
ggtcgcgaacacaagcaagccctggctgaaatgctggccctggctgagctgttcatgccg
atcaaactggttccgaagcaattcgaaggcctggttgaacgtgttcgtagcgccctggat
cgcctgcgtcagcaagagcgcgcgatcatgcagctctgtgttcgtgatgcccgcatgcca
cgcgccgacttcctgcgccagttccctggcaatgaagtggacgaaagctggtccgacgca
ctggccaaaggcaaggccaagtacgccgaagccattggccgcctgcagccggacatcatc
cgttgccagcagaagctgaccgcactcgagaccgagaccggcctgacgatcgccgagatc
aaggacatcaaccgtcgcatgtcgatcggcgaggccaaggcccgtcgcgcgaagaaagag
atggtcgaagccaacttgcgtctggtgatctccatcgccaagaagtacaccaaccgtggc
ctgcaattcctcgacctgatccaggaaggcaacatcggtttgatgaaagcggtagacaag
ttcgaataccgtcgcggctacaagttctcgacttatgccacctggtggatccgtcaggcg
atcactcgctcgatcgccgaccaggcccgcaccatccgtattccggtgcacatgatcgag
acgatcaacaagctcaaccgtatttcccggcagatgttgcaggaaatgggtcgcgaaccg
actccggaagagctgggcgaacgcatggaaatgcctgaagacaagatccgcaaggtattg
aagatcgctaaagagccgatctccatggaaaccccgatcggtgatgacgaagactcccat
ctgggtgacttcatcgaagactcgaccatgcagtcgccaatcgatgtcgccaccgttgag
agccttaaagaagcgactcgcgaagtactctccggcctcactgcccgtgaagccaaggta
ctgcgcatgcgcttcggcatcgacatgaataccgaccacaccctcgaggaagttggtaag
cagttcgacgttacccgtgagcggattcgtcagatcgaagccaaggcactgcgcaagctg
cgccacccgacgcgaagcgagcatctgcgctccttcctcgacgagtaa
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