Pseudomonas chlororaphis subsp. aurantiaca: JM49_04575
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Entry
JM49_04575 CDS
T03338
Name
(GenBank) diguanylate phosphodiesterase
Organism
pcp
Pseudomonas chlororaphis subsp. aurantiaca
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS
PAS_4
PAS_3
PAS_8
Robl_LC7
Motif
Other DBs
NCBI-ProteinID:
AIS10976
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Position
complement(991911..995750)
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AA seq
1279 aa
AA seq
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MSNATPPSSLRATAPASGSPLRGTLKGVLATLVLLLLALLFWQLLDQLQQTRKDQRQHAI
DYNADLAEHISLNLALNAQIALNLLPIVEPPQDAEQQQLLLKKLQLSLPDLQSIALLDAK
GQLISDSDADGQDAAWLAELTSRSRGQRYYYSNASHGALVQLLLHQPSGALKSYWVLRLA
PSFAQSLSPSPDQGFQPTWVIENRLNQKALSRDDGSSTPVTTDDIANSVLVAPLGNSDWQ
LRGLFDDRAVIEQLLPAFIAKCLLGLAFSLLPVIALLNMRRRQRQLHEGRRRYQDIFEGT
GVALCVLDISGLPAFLDKAQLHDSEQLKAWLEHNPQQRQLLLEELRVTEVNQVALRLLNV
DSCEQAWKLLIEGSPLHSSAISNQLLETVINQHKQLELEIRLSDAQGHDQHLWLVLRLPE
DPADYRAVILSISDITSRKLIELSLLEREGFWSDVVRTVPDHLYVQDVISQRMIFSNHHL
GQTLGYNKTELHQMGEYFWEILLHPEDADLYHRLRQEQRHAGYLQLLQCHLRFRHRSGQW
RCFDIREQALARDKYDQVTRIIGVAKDITDQIEASESLRDSERRYRMLAESISDVIFSTD
SQMALNYVSPSVQSVLGYDAEWIFQNGWQSTIANPQQLTGIYALMERVSKALDKPEQLAR
LRNQVQTQLFLFDCLRADGRKIPIELRLVLVWDEHGAFEGVLGVGRDISQQRRAEKDLRM
AATVFEHSTSAILITDPAGYIVQANEAFSRVSGYAVSQVLDQLPNMLTVDEQQEAHLRYV
LKQLHQHSTWEGEVWLKRRNGEHYPAWVGITAVLDDEGDLASYVCFFTDISERKASEQRI
HRLAYYDALTHLPNRTLFQDRLHTALQSAERQKSWVVLMFLDLDRFKPINDSLGHAAGDR
MLKEMATRLLDCVDDDDTVARMGGDEFTLLLQPRTSREIALNRAIHVAEQILASLVKPFV
LEGREFFVTASIGIALSPQDGNELSQLMKNADTAMYHAKERGKNNFQFYQADMNASALER
LELESDLRHALEQQEFILYYQPQFSGDGKRLTGAEALLRWRHPRRGLVPPGDFIPVLEEL
GLVVDVGDWVISEACRQLKAWHQAKVRVPKVSVNISARQFSDGQLGMRIATILKDTGLPP
ACLELELTESILMREVSEAMQILDGLKNLGLSIAVDDFGTGYSSLNYLKQFPIDVLKIDR
TFVDGLPSGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLDFLREHGCDEVQGYLFGRP
MPANSFEGQFSNDALFMFD
NT seq
3840 nt
NT seq
+upstream
nt +downstream
nt
ttgtccaatgccactccgccctcttccctgcgcgcaactgcgcctgcgtccggctcgccc
ctgcgcggtaccctgaaaggcgtgctggcgaccctggtcctgttgctgctcgccctgctg
ttctggcaactgctcgatcaactgcaacagacccgcaaagaccagcgtcaacacgcgatc
gactacaacgccgacctggccgaacacatcagcctcaacctggcgctcaatgcgcagatc
gccctcaacctgctgccgatcgtcgagcccccccaggatgccgaacagcagcaactgctg
ctgaagaagctgcaattgtccctgcccgacctgcaaagcatcgcgctgctggatgccaag
ggccagctcatcagcgacagcgacgccgacggccaggacgccgcctggctcgccgagctg
accagccgcagccggggccagcgctactactacagcaatgccagccacggcgcgctggtc
caactgctgctgcaccagcccagtggtgcactcaagagttactgggtactgcgcctggct
ccctccttcgcccagtccctgagccccagccccgaccagggtttccaaccgacctgggtc
attgaaaaccgcctgaaccagaaagccctcagtcgcgacgacggcagcagcaccccggtg
accaccgacgacatagccaacagcgtgctggtcgcgccgctgggcaacagcgactggcaa
ttgcgcggcctgttcgacgatcgcgcggtgatcgagcaactgttgccggcgtttatcgcc
aagtgcctgctggggttggcattctccctgctgccggtgattgcgctgctgaacatgcgc
cgccgccagcgtcagctgcacgaagggcgtcggcgctaccaggatattttcgaaggcacc
ggggtcgccctttgcgtcctggatatctccgggctgccggcatttctcgacaaggcgcaa
ctgcacgacagcgaacagctcaaggcctggctggaacacaacccacagcagcgccagctg
ctgctggaagaactgcgcgtcaccgaggtcaatcaggtggccttgcggctgctcaacgtc
gactcctgcgaacaggcctggaaactgctgatcgaaggcagcccgctccacagcagcgct
atcagcaaccagctgctggaaaccgtgatcaaccagcacaaacagctggagttggaaatc
cgcctcagcgacgcccagggccatgaccagcacctgtggctggtgctgcgcctgccggaa
gaccccgccgactatcgggcggtgatcctcagcatcagcgacatcaccagccgcaagctc
atcgagctgtcgctgctggaacgcgagggcttctggtcggacgtggtgcgcaccgtgccg
gaccacctttatgtgcaggacgtcatcagccagcggatgatcttcagcaaccaccacctg
ggccagaccctcggctacaacaagaccgaactgcaccagatgggcgagtacttctgggaa
atcctcctgcacccggaagacgccgacctctatcaccgcctgcgccaggaacagcggcat
gccggctacctgcaattgctgcagtgccatttgcgctttcgccaccgcagcggccaatgg
cgctgtttcgacatccgcgaacaggccctggcgcgggacaagtacgaccaggtcacgcgc
atcatcggcgtggccaaggacatcaccgaccagatcgaggccagcgaatccctgcgcgac
agcgaacggcgctatcgcatgctcgccgaaagcatcagcgacgtgattttctccaccgac
agccagatggccctcaactatgtcagcccctcggtgcagtcggtactgggctatgacgcc
gagtggatcttccagaacggctggcaatcgaccatcgccaacccgcaacagctgaccggc
atctatgccctgatggagcgggtcagcaaggccctggacaaacccgagcaactggcgcga
ttgcgcaaccaggtgcagacccagttgttcctgttcgactgcctgcgggccgacgggcgc
aagattccgatcgagctgcgcctggtgctggtgtgggacgaacacggcgccttcgaaggc
gtgctcggggtcggccgcgatatcagccagcagcgccgcgcggaaaaagacctgcgcatg
gcggccacggtattcgagcactcgacctcggcgatcctgatcaccgacccggcgggctac
atcgtccaggccaacgaagcgttcagccgggtcagcggctacgcggtgtcccaggtactc
gaccagttgccgaacatgctcaccgtcgacgaacagcaggaagcccacctgcgctatgtg
ctcaagcagctgcaccagcacagcacctgggaaggcgaagtctggctcaagcgccgtaac
ggcgagcactatccggcctgggtcggcatcaccgcggtgctcgatgacgaaggcgacctg
gccagctatgtgtgcttcttcaccgacatcagcgaacgcaaggccagcgagcagcgcatt
caccgcctggcctactacgacgccctgacccacctgcccaaccgcacgctgttccaggac
cgcctgcacaccgccctgcagtcggcggagcggcagaagtcctgggtggtgctgatgttc
ctcgacctggaccgcttcaagccgatcaatgactccctgggccacgccgcgggcgaccgc
atgctcaaggaaatggccacccgcctgctcgattgcgtcgacgatgacgacaccgtggcg
cgcatgggcggcgatgagttcaccttgctcctgcaaccgcggaccagccgcgagatcgcc
ctgaaccgggcgatccacgtcgccgagcagattctcgccagcctggtgaagccgttcgtg
ctcgaaggccgtgagttcttcgtcaccgccagtatcggcatcgccctcagcccgcaggac
ggcaacgagctgagccaactgatgaaaaacgccgacaccgcgatgtaccacgccaaggaa
cgcggcaagaacaacttccagttctaccaggccgacatgaacgccagcgccctggaacgc
ctggagctggaaagcgacctgcgccatgccctggaacagcaggaattcatcctctactac
cagccgcagttcagcggcgacggcaagcgcctgactggcgccgaggcgctgctgcgctgg
cgccatccacggcgcgggctggtgccgccgggggacttcatcccggtgctcgaagaactg
gggctggtggtggatgtcggcgactgggtgatcagcgaagcctgtcgccagctcaaggcc
tggcaccaggccaaggtccgggtgccgaaggtctcggtgaacatctcggcccgccagttc
tccgatggccagctgggcatgcggatcgccaccatcctcaaggacaccggcctgccgccc
gcctgcctggagctggaactgaccgaaagtatcctgatgcgcgaagtcagcgaggcgatg
cagatcctcgacggcctgaagaacctcggcctgagcatcgcggtcgacgacttcggcacc
ggctattcatcgctgaactacctcaagcagttccccatcgatgtcttgaagatcgaccgc
accttcgtcgatggcctgccgtccggcgagcaggacgcgcagatcgcccgcgccatcatc
gccatggcccacagcctgaacctggcggtgatcgccgagggcgtggaaacccatgagcag
ctggacttcctgcgcgaacacggctgtgacgaagttcagggttatctgttcggccggccg
atgccggccaacagcttcgaagggcagttcagcaacgacgcgctgttcatgttcgactaa
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