Pseudomonas chlororaphis subsp. aurantiaca: JM49_09715
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Entry
JM49_09715 CDS
T03338
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pcp
Pseudomonas chlororaphis subsp. aurantiaca
Pathway
pcp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JM49_09715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcp03019
]
JM49_09715
03009 Ribosome biogenesis [BR:
pcp03009
]
JM49_09715
Enzymes [BR:
pcp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JM49_09715
Messenger RNA biogenesis [BR:
pcp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JM49_09715
Ribosome biogenesis [BR:
pcp03009
]
Prokaryotic type
rRNA helicases
JM49_09715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
AIS11950
LinkDB
All DBs
Position
2058282..2059955
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AA seq
557 aa
AA seq
DB search
MTQEIGGFAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPET
RQTVLFSATLPQSIRAIAERHLKDPKHVKIQSKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEARGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCSPRAL
AAALLRKATNGQALNLAAIEKERPLVPNSAPRGDRPERSGDRPDRGERERRAPMPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEEGLERLLTKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaatcggcggcttcgccgctcttgaacttcatcccaatatcgtcgctgca
gtagtcgctaccggctatgaagagccttcggccattcagcagcagtcgatcccgatcatc
ctcgccggtcacgatatgattggccaggcgcaaaccggtaccggtaagaccgccgcgttc
gccctgcctatcctgcaccgcattgatccgtccaagcgcgagccgcaagctctgatcctg
gccccaacccgtgagttggcgctgcaagttgcaaccgctttcgaaacctacgccaagcaa
atgccgggcgtaactgttgtggctgtctacggcggcgcgccgatgggcccacaactgaaa
gcaatccgtaatggcgcacagatcgttgtcgccactccgggccgtctgtgcgaccacctg
cgtcgcgacgaaaaagtcctggcgaccgtgaaccacctggttctcgacgaagccgacgaa
atgctcaagctgggcttcatggatgacctggaagtgatcttcaaggccatgccggaaacc
cgccagaccgtactgttctcggccaccctgccgcagtcgatccgtgcgatcgccgagcgt
cacctgaaggacccgaaacacgtcaagatccagagcaagacccagaccgtcaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacttctgccgttctcagcctgctg
gaagtggaagatttcgacgccctgatcatgttcgtgcgcaccaagcaagcgaccctggac
ctggccagtgccctggaagccagaggctacaaagccgctgcgctgaacggcgacatcgcc
cagaaccagcgtgagcgcgtgatcgactccctcaaggatggccgcctggacatcgttgtg
gcgaccgacgttgccgcccgtggcctggacgtaccgcgcatcacccacgtattcaacgtg
gacatgccgtacgacccggaatcctacgtgcaccgtatcggccgtaccggccgtgccggt
cgcgaaggtcgtgcactgctgctggtgactccacgcgagcgccgcatgctgcaagtgatc
gagcgtgtaaccggtcagaaggtggccgaggttcgtctgccggacgcccaggccgttctc
gatgcgcgcatcaagaagctgaccaacagcctgtcgccgctggtggctgacgctgaatcg
acccacggtgatctgctcgatcgcctgaccgccgatatcggttgcagcccgcgtgccctg
gccgcggccctgctgcgcaaggccaccaacggtcaggcgctgaacctggcagcgatcgag
aaggaacgcccactggtgccgaacagcgcgccacgtggcgaccgtcctgagcgttctggc
gatcgtcctgatcgcggcgagcgtgagcgtcgtgcaccgatgcctctggctgaaggtcgt
gcccgttgccgtaccgcgctgggcgcgcgcgacggtatcgcggccaagaacctgctgggc
gccatcctcaacgaaggcggcctggcccgcgaagccatcggtcgcatccaggtgcgtgac
agcttcagcctggtcgagctgccggaggaaggtctggaacgtctgctgaccaaactgaag
gacactcgcgtggccggcaagcagctgaagctgcgtcgttatcgcgaagactga
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