Pseudomonas chlororaphis subsp. aurantiaca: JM49_12865
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Entry
JM49_12865 CDS
T03338
Name
(GenBank) type VI secretion protein
KO
K11893
type VI secretion system protein ImpJ
Organism
pcp
Pseudomonas chlororaphis subsp. aurantiaca
Pathway
pcp02025
Biofilm formation - Pseudomonas aeruginosa
Brite
KEGG Orthology (KO) [BR:
pcp00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
JM49_12865
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
pcp02044
]
JM49_12865
Secretion system [BR:
pcp02044
]
Type VI secretion system
Imp/Vas secretion system core components
JM49_12865
BRITE hierarchy
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GFIT
Motif
Pfam:
T6SS_VasE
Motif
Other DBs
NCBI-ProteinID:
AIS12539
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Position
2792123..2793457
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AA seq
444 aa
AA seq
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MSWNNRVVWSEGMFLRPQHLQQHDRYMEALIDGRCRPLSAGGWGFSELRIDESLLSQGKV
AIVSARGVLPDGTPFDIPGDDLPPPPLNVNDNLRDAQVFLGLPLKRAGSRDTVGEGEAPG
GARYISQVREVRDDNAAFESRASLAIGGKALRLLTERDGLGEYACLGLIRVLEKRADNAV
QLDDDYIPPLLDVAASSVLAAFRSELQGLLHQRGEALAGRVVASGAGGASEIADFLLLQL
VNRAEPLLSHLARLSPLHPQDFYREAVCLAGEFATFSAAGRRPSDYPAYAHDDLASSFAP
VMHDLRQALSMVIDTRATPIPIVEKSYGVHVAMLADKSLLEMASFVLVVRADVPAETLRT
HFPQQAKIGSVEHIRDLVNLQLPGIALLSMPVAPRQIPYHAGSSYFELDRGSEHWKQLAN
SGGFAFHIAGQFPGLNLAFWAIRG
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgtcctggaataaccgtgtggtgtggtccgaaggaatgtttctgcggccgcagcatctc
cagcagcatgatcgctacatggaagccctgatcgatggtcgttgccgcccgttgagcgcg
gggggctgggggttttccgagctgcgcatcgacgagtccctgctcagccagggcaaggtg
gcgattgtcagcgcgcgtggggtgctacccgatggcacgcctttcgacattcccggcgac
gatctgccgccgccgccactgaacgtgaacgacaacctgcgcgatgcgcaggtcttcctg
ggcttgccgctcaagcgtgccggcagccgcgacaccgtgggggagggcgaggcaccgggc
ggtgcgcgctatatcagccaggtgcgggaagtgcgcgatgacaacgccgccttcgagagc
cgggcatcgctggcgatcggcggcaaagccttgcgcctgctgaccgagcgcgacggcctc
ggcgaatatgcctgcctcggtttgatccgggtcctggaaaaacgcgcggacaatgccgtg
cagctggacgacgactatatcccgccgctgctcgatgtggccgcctccagcgtgctggcg
gcctttcgcagcgagctgcaagggctgttgcaccagcgcggcgaggccctggcaggcagg
gtggtggcctcgggggccggcggcgcctcggagattgccgactttctgctgctgcaactg
gtcaatcgcgccgagcccctgctcagccacctggcccggttgagccccttgcacccgcag
gacttctatcgcgaggcggtctgcctggcgggggagttcgccaccttttccgccgccggg
cgtcgccccagcgactacccggcctatgcccacgacgacctggcgagcagtttcgccccg
gtgatgcacgatctacggcaagccttgtcgatggtcatcgatacccgcgccacgccgatt
cccatcgtcgagaaatcctacggcgtgcatgtggcgatgctggccgacaagagcttgctg
gagatggccagcttcgtcctggtggtgcgggctgacgtgccggccgaaaccctgcgcacg
catttcccccagcaggccaagatcggctcggtggaacacatccgcgacctggtcaacctg
cagttgccgggcatcgccttgctgtccatgcccgtggcgccgcggcagattccctatcac
gccggctcaagctatttcgagctggaccgtggcagcgaacactggaaacagttggccaac
tcagggggattcgcctttcacattgccggccagttcccgggcctgaacctggccttctgg
gccatccgaggataa
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