Pseudomonas chlororaphis subsp. aurantiaca: JM49_14825
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Entry
JM49_14825 CDS
T03338
Name
(GenBank) RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pcp
Pseudomonas chlororaphis subsp. aurantiaca
Pathway
pcp02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pcp00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
JM49_14825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcp03021
]
JM49_14825
Transcription machinery [BR:
pcp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JM49_14825
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
PhyR_sigma-like
HTH_23
GerE
HTH_11
HTH_38
HTH_24
HTH_28
HVO_A0261_N
RovC_DNA-bd
HTH_7
HTH_29
Xre-like-HTH
HTH_Tnp_ISL3
HTH_31
DUF8073_M
TnsD
DUF6362
HTH_40
MA3
HTH_Mga
HTH_17
HTH_36
Sigma70_r3
Motif
Other DBs
NCBI-ProteinID:
AIS12891
LinkDB
All DBs
Position
3235343..3235852
Genome browser
AA seq
169 aa
AA seq
DB search
MIEAATPPEQSLHALYRDHRSWLESWLRQRMGNAWDAADLSQDTFLRVLTSSQQLVDLRE
PRAYLVTVGKRLLSNFYTRRKLEQAYLDALASLPEDSVPSPEQRWVLLETLQALDELLDG
LPPLVRRAFLWSQLEGLGYREIAERLDVSERTVKRYMAQAYEHCLLVEL
NT seq
510 nt
NT seq
+upstream
nt +downstream
nt
atgattgaagcagcgacgccaccggagcaaagcctacatgccctgtaccgcgaccatcga
agctggctcgagagttggttgcgccagcgcatgggcaacgcctgggatgcggcggacctg
agccaggacaccttcctgcgcgtgctcaccagctcccagcagctggtcgacctgcgcgag
ccgcgggcctacctggtgaccgtcggcaagcgcctgctgagcaacttctacacccggcgc
aaactcgaacaggcctacctggacgcgctggccagcctgcccgaagacagcgtgccgtcc
ccggaacagcgctgggtgctgctggaaaccctgcaagccctcgacgaactgctcgatggc
ctgccgcccctggtgcgccgggcgtttctctggagccagctggaagggctgggttaccgc
gagatcgccgaacgcctcgacgtctcggaacgcaccgtcaagcgctacatggcccaggcc
tacgaacactgcctgctggtggagctgtga
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