Pseudomonas chlororaphis subsp. aurantiaca: JM49_16805
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Entry
JM49_16805 CDS
T03338
Name
(GenBank) chromosome segregation protein SMC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pcp
Pseudomonas chlororaphis subsp. aurantiaca
Brite
KEGG Orthology (KO) [BR:
pcp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcp03400
]
JM49_16805
DNA repair and recombination proteins [BR:
pcp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
JM49_16805
Archaeal homologous recombinant proteins
JM49_16805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcC_Walker_B
AAA_29
AAA_21
SMC_N
nSTAND3
ABC_tran
MMR_HSR1
cobW
AAA_22
AAA_25
RsgA_GTPase
Motif
Other DBs
NCBI-ProteinID:
AIS13249
LinkDB
All DBs
Position
3712230..3715871
Genome browser
AA seq
1213 aa
AA seq
DB search
MKILAIRLKNLASLAGPFEIDFSAEPLASAGLFAITGPTGAGKSTLLDALCLALFGAVPR
LNNIGRETKVPEVDSEMLTSDPRTLLRRGTGSGYAEVDFVGIDGHRYRARWETNRARDKA
NGKLQASKQSLHDLDSNQLLASQKRDYEQLIEAKLGLNFEQFTRAVMLAQSEFSAFLKAD
DKERSELLEKLTNTSIYSQLGRRAFIKNKEADEVHKTLKAQASGITPLEPEARAELDQRF
DTAQQQLKAQQAQLKQLELQHGWLKELQQLQDQQQNAAEQLQQAQTAWEGLASERTRLTR
LEQLAPQRHQFARQVELNQQLTPLREQIRQQRQQQGAEQQRQGELEQQLATAQAALLAAQ
EQQGTSAPLLREAFAEQSTLAHLGKTCGEAGELKDTLQQASEQGQQAIQAMLEQQRLVGE
RLQQIAEQLEHSSHLAPLSDAWNAYRDRLQQLMLAGNRLNKGQEELPGLQQRAASAAQQL
AAQRDELQVLYSEAGAEPHAVAEQLQILSDLLQDNRKQQRAFEELARLWASQQELDKRGA
ELADKLQTAARQREELNRIGLQSKAELTVAEQTLTVTQQLLERQRLARSASVEELREQLQ
DDQPCPVCGSHEHPYHQPEALLQSLGRHDESEEANARKAVDELKEKLAELRSQVGGLIAQ
QKEFLQQQEQLASQQQALAPSIEAHPLAAALLDQDAGKRDAWLNQQLSQLNQSIQQDEQR
QGALLKLQKDAARLQQQLQAAIEASQEATQQLTQQQQQLGADRQRLEEELSAFATLLPAD
TLEALRSDPAATFMQIDQQVMQRLEQLDQQKEEQQEQQQRQLALDKEQDRQQTRVQQLQA
AQEQFNTLAEQQQAARNKLAQLLGEHASAEQWQQHLEQAVEQARAADVQANQQLQEVRSL
LVQLGAELQGKAERLLGLEAEQQALGSKIADWRQQHPELDDGGLEQLLSLDDQQVAALRQ
QLQEREKAMEQAKVLVTEREQRLHSHQAQHDGQLDAEQLASALSELHNQLAASEQLSAEL
RAQQTEDQRRQDANQALGEQIAQAYAEWQRWARLNALIGSASGDTFRKIAQAYNLDLLVH
HSNAQLRQLVRRYRLKRGGSMLGLLVMDTEMGDELRSVHSLSGGETFLVSLALALGLASM
ASSTLKIESLFIDEGFGSLDPESLQLAMDALDGLQAQGRKVAVISHVQEMHERIPVQIQV
RRQGNGLSTLEVK
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgaagattctggccatccgcctgaagaacctggcctccctggccggcccctttgaaatc
gacttcagcgccgagcccctggccagcgccgggctgttcgccatcaccgggcccaccggc
gccggcaagagcaccctgctcgacgccctgtgcctggcgctgttcggcgccgtgccgcgg
ctgaacaatatcggtcgcgaaaccaaggtgccggaggtggacagcgagatgctcaccagc
gacccgcgcaccctgctgcggcgtggtactggcagcggttacgccgaggtcgacttcgtc
ggcatcgacggccatcgctaccgcgcgcgctgggaaaccaaccgcgcccgggacaaggcc
aatggcaagctgcaggccagcaaacagagcctgcacgacctggacagcaatcaactgctg
gccagccagaaacgcgactacgaacagttgatcgaagccaagctggggctcaacttcgag
cagttcacccgcgcggtgatgctggcccagagcgagttcagcgccttcctcaaggccgac
gacaaggaacgcagcgagctgctggaaaagctcaccaacacctcgatctacagccagcta
ggccgtcgtgccttcatcaagaacaaggaagccgacgaggtccacaagaccctcaaggcc
caggccagcggcatcacccccctggagcccgaggcccgcgccgagctggaccagcgtttc
gataccgcccagcagcagctcaaggcccagcaggcgcagctcaagcaactggagttgcaa
cacggctggctcaaggaactgcagcagttgcaggaccagcagcaaaacgccgcagagcaa
ctgcaacaggcacaaacggcctgggaaggcctggccagcgagcggaccaggctgacccgc
ctggagcagctggcgccgcaacgccatcagttcgcccggcaggtggaactgaaccagcaa
ctgacgccgctgcgcgagcagatccggcaacagcgccagcaacaaggcgcagagcaacaa
cgccagggcgaactggagcaacaactggccacggcccaggccgcattgctcgccgcccag
gaacagcaaggcaccagcgccccgctgctgcgcgaggcctttgccgagcaaagcaccctc
gcccacctgggcaagacctgcggcgaagccggcgagctcaaggacacactgcaacaggcc
agcgagcaaggccagcaggcgatccaggccatgctcgaacagcagcggctggtgggcgaa
cgcctgcagcagattgccgagcagctggaacacagcagccatctggcgccgctgagcgat
gcctggaacgcctaccgcgatcgcctgcaacagctgatgctggccggcaaccggctgaac
aagggccaggaagaactgcccggcctgcaacaacgggccgccagcgcggcgcagcaactg
gccgcgcaacgcgatgagttgcaagtgctgtacagcgaagccggtgccgagccccatgcg
gtggccgaacagttgcagatcctcagcgacctgctgcaggacaaccgcaagcaacagcgc
gccttcgaagaactggcgcggctgtgggccagccagcaggagctggacaagcgcggcgcg
gaactggcggacaagttgcagaccgcggcgcgccagcgcgaagagctgaaccggatcggc
ctgcaaagcaaggccgagctgacggtcgccgaacagaccctgacggtgacccagcaactg
ctggaacgccagcgcctggcacgcagcgccagtgtcgaagagctgcgcgaacagttgcag
gacgatcagccctgcccggtctgcggcagccacgagcacccctaccatcagcccgaggcg
ctgttgcagagcctgggtcgccacgacgaaagcgaagaagccaacgcacgcaaggcggtg
gatgaactcaaggaaaagctcgccgaactgcgcagccaggtcggcggcctgatcgcccag
cagaaggaattcctccagcaacaggagcaactggcaagccagcagcaggccctggcaccg
agtatcgaagcccatccgctggcggcggcgctgctcgaccaggacgccggcaagcgcgac
gcctggctgaaccagcaactgagccagctgaaccagagcatccagcaggacgaacagcgc
caaggcgccctgctgaaactgcaaaaggacgccgcgcgcctgcaacaacaactgcaggcg
gcgatcgaggccagccaggaagccacgcaacagctgacccagcagcaacagcagctgggc
gcggatcgccagcgcctggaggaagagctgtcggccttcgccaccctgctgccggccgat
accctcgaagccctgcgcagcgacccggccgcgacctttatgcagatcgaccagcaggtc
atgcagcgcctggagcagctcgaccaacagaaggaagagcaacaggagcagcaacagcgc
cagctggccctggacaaggaacaggaccgccagcagacccgcgtgcagcaactgcaagcc
gcccaggagcagttcaataccctggccgagcaacagcaggccgcccgcaacaagctcgcg
caattgctgggcgaacacgccagtgccgagcagtggcagcaacatctggaacaggccgtg
gaacaggcgcgcgccgccgatgtgcaggccaaccagcagttgcaggaggtccgcagcctg
ctggtgcagctgggcgcggaactgcaaggcaaggcagaacgcctgctgggcctggaagcc
gaacagcaggcgctgggcagcaagatcgccgactggcgccagcagcacccggagctggac
gacggcggcctggaacagttgctcagcctcgacgaccagcaggtcgccgcgttgcgccag
caactgcaagagcgcgaaaaggcgatggaacaggccaaggtcctggtcaccgaacgcgag
caacgcctgcacagccatcaggcccagcacgacggccagctcgacgccgaacaattggcc
agcgccctgagcgaattgcacaaccagctggccgccagcgaacagctgagcgccgaactg
cgcgcccagcagaccgaggaccagcgccggcaagacgccaaccaggcgctgggcgagcag
atcgcccaggcctacgccgaatggcaacgctgggcgcggctcaatgccttgatcggctcg
gccagcggcgacaccttccgcaagatcgcccaggcctacaacctcgacctgctggtgcat
cactccaacgcgcaactgcgccagctggtgcggcgctatcgcctcaagcgcggcggcagc
atgctcggcctgctggtgatggacacggaaatgggcgatgaactgcgctcggtgcattcg
ctgtccggcggcgagaccttcctggtgtccctggcgctggccctgggcctggcgtccatg
gcctccagcacgctgaagatcgagtcgctgtttatcgacgaaggtttcggcagcctcgat
ccggaatccctgcaactggcgatggacgccctcgacggtttgcaggcccagggccgcaag
gtggcggtgatttcccacgtgcaggaaatgcacgagcggattccggtgcagatccaggta
cggcgccagggcaacggcctgagcaccctggaggtgaaatga
DBGET
integrated database retrieval system